Glyma13g40960 - SoyBase

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Report for Sequence Feature Glyma13g40960

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41375258
stop:	41380043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46440	AT	Annotation by Michelle Graham. TAIR10: UDP-XYL synthase 5 \| chr3:17089268-17091611 REVERSE LENGTH=341	SoyBase	E_val: 0	ISS
GO:0009225	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0048040	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1429	KOG	dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF35	Panther	gb def: udp-glucose 4-epimerase [bacillus halodurans]	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B7FKX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase n=2 Tax=Medicago truncatula RepID=B7FKX2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M4U9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4U9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g40960 not represented in the dataset	Glyma13g40960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40960

Paralog	Evidence	Comments
Glyma15g04500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g334500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40960

Limit To All Plant Sequences

>Glyma13g40960.2   sequence type=transcript   gene model=Glyma13g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTAATGTGGGGTTGGGTTTGGTTGCATGTGGCTTGGTTTTTCTTTTCTGAATCTTTACTTCAGAATAATAGTTTGGTGTGATTTCCATTACTGTTGTCGTTGCCTAGGAGCTTTCATTATGTCCTTCAACTTTCCGTGACTTTCAAGGCTTCCAAATTGAATTACTAAGCTTTTGGGGGATTAGTTTTATCTATTATAAACTTATAAAGTTTTTTTTTAATTCCCTTCAAAATTGAGTTTAATGTTTGATGGAAGAATTTTCAGATTTTGGTTCTCATTTATCTATATAAATAGGTCTATGATCATGGAGTGGTAAGACAAGAGTGATTAGGGTTTTGGTTTGGTGTTTTTCTTAAGCTTGAGATCAGGAATTAATTTCAGAGGTTCAGAGAATGGCAACGGATTCTTCTAATGGTAATGGACATCACCAAACAACAACAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTAATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATAGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGGGGGGAACCATTGACAGTCCAATGTCCAGGAACACAAACTCGAAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGGAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGGTGAATTTACAATGACTGAACTTGCTGAGACCGTGAAAGAGCTTATTAATCCAGGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCAGACATCACAAAAGCAAAGGAATTGTTGGGCTGGGAGCCAAAGGTCAAGTTGCGTGATGGTCTTCCTCGTATGGAAGAGGATTTTCGTCTGAGGCTTGAAGTTGGCAAAAAGAATTAATTTGTTTTCGCTCTTTTGGTGACATGTCAAAGTAGAGAAATAATAAGTGAGATGAGTCTGGCCCATTTTCAAAATTTTCATCATTATAGTTATTATTATGATTATGATACTGAGAAAGTTGGGGGACCTGAAATTTGGCGTCTACAGCTATCACATTGCTATATATCTTGTTTTGTTTGGCAAAAGACTGCAGCATTTCACTACAAATTTTGCTGTTTGTAAGATGATTGAATTGAAATTTTTTCCTGTTTTCTGCTTATCTTTTCAACTTTCCTTTGCTAAGTGTATTTGAGAACTGAGCTTCAGGAATGTTAATTGCATAGTCGAATTTTGTAAGCCATTTATTTACACTGATGCAAGGTCTACACACAAGTGGTCGAATTTTGTTTTGAATTGTATAATTCATGCATTGGAGAACGATTTTGTCTGTAATAAAATTCTATTCAAAAGTTTATGTTATCGTCTTTTCTGGAGCTGGAACTGGAACTAATCTGAAGTTAGTTTTACATGATAA

Coding sequences of Glyma13g40960

Limit To All Plant Sequences

>Glyma13g40960.1   sequence type=CDS   gene model=Glyma13g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGGATTCTTCTAATGGTAATGGACATCACCAAACAACAACAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTAATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATAGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGGGGGGAACCATTGACAGTCCAATGTCCAGGAACACAAACTCGAAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGGAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGGTGAATTTACAATGACTGAACTTGCTGAGACCGTGAAAGAGCTTATTAATCCAGGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCAGACATCACAAAAGCAAAGGAATTGTTGGGCTGGGAGCCAAAGGTCAAGTTGCGTGATGGTCTTCCTCGTATGGAAGAGGATTTTCGTCTGAGGCTTGAAGTTGGCAAAAAGAATTAA

>Glyma13g40960.2   sequence type=CDS   gene model=Glyma13g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGGATTCTTCTAATGGTAATGGACATCACCAAACAACAACAAAGCAACCTCCTTTGCCGTCTCCCCTGCGCTTTTCCAAATTTTTTCAGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTAATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATAGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGTTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGGGTGGCCGAGACATTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGGGGGGAACCATTGACAGTCCAATGTCCAGGAACACAAACTCGAAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGGAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGGTGAATTTACAATGACTGAACTTGCTGAGACCGTGAAAGAGCTTATTAATCCAGGTGTGGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCAGACATCACAAAAGCAAAGGAATTGTTGGGCTGGGAGCCAAAGGTCAAGTTGCGTGATGGTCTTCCTCGTATGGAAGAGGATTTTCGTCTGAGGCTTGAAGTTGGCAAAAAGAATTAA

Predicted protein sequences of Glyma13g40960

Limit To All Plant Sequences

>Glyma13g40960.1   sequence type=predicted peptide   gene model=Glyma13g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCYVSDLVDGLIRLMGGSNTGPINLGNPGEFTMTELAETVKELINPGVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPRMEEDFRLRLEVGKKN*

>Glyma13g40960.2   sequence type=predicted peptide   gene model=Glyma13g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCYVSDLVDGLIRLMGGSNTGPINLGNPGEFTMTELAETVKELINPGVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPRMEEDFRLRLEVGKKN*

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