Glyma13g40880 - SoyBase

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Report for Sequence Feature Glyma13g40880

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41326896
stop:	41329724
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46020	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:16912511-16913250 REVERSE LENGTH=102	SoyBase	E_val: 7.00E-29	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR24622	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24622:SF209	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7IHN0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold-inducible RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7IHN0_MEDTR	SoyBase	E_val: 3.00E-38	ISS
UniRef100_I1M4U1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4U1_SOYBN	SoyBase	E_val: 6.00E-56	ISS

Expression Patterns of Glyma13g40880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40880

Paralog	Evidence	Comments
Glyma15g04550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g333700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40880

Limit To All Plant Sequences

>Glyma13g40880.1   sequence type=CDS   gene model=Glyma13g40880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGAGAATCGGGACAAAGCTCTTCGTCCACAGATTATCCTTTTACACTACACAGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGACTAGTTACCCAAGCTGATCTAGCGTTGGATCCTATAACCAAAAGGCCCAAAGGTTTCGGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTGCAAGGCCATGAATGGCAGGATTGTTAATGGAAGGCTGATTTTGGTTGAACCTGCAAACGAAAAATGA

Predicted protein sequences of Glyma13g40880

Limit To All Plant Sequences

>Glyma13g40880.1   sequence type=predicted peptide   gene model=Glyma13g40880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQRIGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVEPANEK*

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