Glyma13g40870 - SoyBase

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Report for Sequence Feature Glyma13g40870

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41316467
stop:	41320275
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59840	AT	Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein \| chr5:24107450-24109049 REVERSE LENGTH=216	SoyBase	E_val: 5.00E-137	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0078	KOG	GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF232	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1M4T8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4T8_SOYBN	SoyBase	E_val: 6.00E-157	ISS
UniRef100_O49844	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small GTP-binding protein n=1 Tax=Daucus carota RepID=O49844_DAUCA	SoyBase	E_val: 8.00E-141	ISS

Expression Patterns of Glyma13g40870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g40870 not represented in the dataset	Glyma13g40870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40870

Paralog	Evidence	Comments
Glyma15g04560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g333500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40870

Limit To All Plant Sequences

>Glyma13g40870.4   sequence type=transcript   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCATTTAACAAACTACAAACTACAAACTAGGCGCTTATGGAGAATGTTTGGTAGCTACAATATATAAAAATGAAAATTTTACAATGAATGAATATGAATATGGAAACAGCCTTACAACAAATTGGGTGCCTCTATAGTCGGGGAAGGCTCCCAAGTTGAAGGTTGTATCCTACTCCTACTGTTCTGGTCAATCAAAAATTCCCGAGATTTTTAACTTTATTATTATTATTTTAAAATTACAAAAATATAAAATAAAAACAGCAAAATTAGACATCGCTCTTCTCTCTCTCTAAAAATCTCCGGCGGTCCTTCAGTCCATTTTCCTTTCCATTTCGGATCTGGTTCTTCTCTCTCTCTCTCTCTCTTGCATTCCAGTTTTTTGCGTGTGCGAATTAACTCGAAAATGATTCCCTTTATTTTTGGATCGTATGCAGATAGGAATAGATTTCGTCAGTGTTGAAATCACGAGAAATTCATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGAGGAGGCAACATTATTATCCAAGAACAAGAAGGAGGAAAATACATGCATGATGATAAATTGATGATGATTCGTGCTTTGGATTTTACGCGGTCATTCTTTAATAGTTTCTTTCCTAGATTAAGTTATATATTAATTCAAAGTTAGATATGATTGTGTCATTGCCCCTTGTGTTGTTTGTTTGGGCAACAAATCTATTGATCGTTGATATTTTGAATGGTTAATTGCATTGATATTCTTTAAAACGTAATAAAATTATATTGACCCTATTCTTAGTTAAAAAAAATTACAC

>Glyma13g40870.5   sequence type=transcript   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCATTTAACAAACTACAAACTACAAACTAGGCGCTTATGGAGAATGTTTGGTAGCTACAATATATAAAAATGAAAATTTTACAATGAATGAATATGAATATGGAAACAGCCTTACAACAAATTGGGTGCCTCTATAGTCGGGGAAGGCTCCCAAGTTGAAGGTTGTATCCTACTCCTACTGTTCTGGTCAATCAAAAATTCCCGAGATTTTTAACTTTATTATTATTATTTTAAAATTACAAAAATATAAAATAAAAACAGCAAAATTAGACATCGCTCTTCTCTCTCTCTAAAAATCTCCGGCGGTCCTTCAGTCCATTTTCCTTTCCATTTCGGATCTGATAGGAATAGATTTCGTCAGTGTTGAAATCACGAGAAATTCATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGAGGAGGCAACATTATTATCCAAGAACAAGAAGGAGGAAAATACATGCATGATGATAAATTGATGATGATTCGTGCTTTGGATTTTACGCGGTCATTCTTTAATAGTTTCTTTCCTAGATTAAGTTATATATTAATTCAAAGTTAGATATGATTGTGTCATTGCCCCTTGTGTTGTTTGTTTGGGCAACAAATCTATTGATCGTTGATATTTTGAATGGTTAATTGCATTGATATTCTTTAAAACGTAATAAAATTATATTGACCCTATTCTTAGTTAAAAAAAATTACAC

Coding sequences of Glyma13g40870

Limit To All Plant Sequences

>Glyma13g40870.3   sequence type=CDS   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAGTAAGTGATGCTTGCATGAAAATGTGGAAACTTCCTTAA

>Glyma13g40870.4   sequence type=CDS   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGA

>Glyma13g40870.5   sequence type=CDS   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGA

Predicted protein sequences of Glyma13g40870

Limit To All Plant Sequences

>Glyma13g40870.3   sequence type=predicted peptide   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETVSDACMKMWKLP*

>Glyma13g40870.4   sequence type=predicted peptide   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG*

>Glyma13g40870.5   sequence type=predicted peptide   gene model=Glyma13g40870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG*

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