Glyma13g40850 - SoyBase

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Report for Sequence Feature Glyma13g40850

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41299697
stop:	41302791
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59800	AT	Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain 7 \| chr5:24094752-24096422 REVERSE LENGTH=306	SoyBase	E_val: 3.00E-14	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0010369	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromocenter	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008327	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding	SoyBase	N/A	ISS
GO:0019899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme binding	SoyBase	N/A	ISS
PF01429	PFAM	Methyl-CpG binding domain	JGI		ISS
UniRef100_D2DW72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyl-CpG binding protein n=1 Tax=Phaseolus vulgaris RepID=D2DW72_PHAVU	SoyBase	E_val: 1.00E-54	ISS
UniRef100_I1M4T4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4T4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g40850 not represented in the dataset	Glyma13g40850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40850

Paralog	Evidence	Comments
Glyma15g04596	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g333300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40850

Limit To All Plant Sequences

>Glyma13g40850.5   sequence type=transcript   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTAGAGGAGTGAGAATCTTCATGATCGAGGATGGGTCTTCTTTCAAAGAAAAAATCTTAAATTAGAGTTAAGAAAAGAAAAGATCTTTGTACAAATCTGAACTGCCACCCATAAAAAAAGTGTTCCGAAATCCCAAAATGCCCTCTTAAGCTTACACAGCCTTGTTCAATCTGGTGGGTCATACATATTACATAGCAAATGCAGTTATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGAGCTTTGCAGGGTTCACAATGGAGATGACTGGAAATCTTGGTGAGAATGTGCTGATTCCATGTAGCTTAGATTGTAGGCGGGAATGGGATTATCCACGTGCCTTAATTATCTTAACCTATAAGCAGATATTGTTCTATTTCACTGATTATAATCATGTAGGTTCTATCACAGGGTTGCACCTCGAAACAACTTGGGAAAGATTGAACTAGTGCCAACTGATCTATACTAAAAGCCCGTTGGCAGTAACAACTTTTGAACAAAGAGTGATGTGCTGATTCCTTGTACATGTGGTTTGATTCAACATTTCTGAAATTAAATTTTGAAATTTTTCATATTTTCAGAATTCAATTCCCAGACGTACGTAATCACGTTTTGGAAATTAATTGGAGAA

>Glyma13g40850.6   sequence type=transcript   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTAGAGGAGTGAGAATCTTCATGATCGAGGATGGGTCTTCTTTCAAAGAAAAAATCTTAAATTAGAGTTAAGAAAAGAAAAGATCTTTGTACAAATCTGAACTGCCACCCATAAAAAAAGTGTTCCGAAATCCCAAAATGCCCTCTTAAGCTTACACAGCCTTGTTCAATCTGGTGGGTCATACATATTACATAGCAAATGCAGTTATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGAGGTAAGCATGAAATAAGTTAATTTATACTCTGAAAGTCACTTGTTGATTTCCTTTCAGCTTTGCAGGGTTCACAATGGAGATGACTGGAAATCTTGGTGAGAATGTGCTGATTCCATGTAGCTTAGATTGTAGGCGGGAATGGGATTATCCACGTGCCTTAATTATCTTAACCTATAAGCAGATATTGTTCTATTTCACTGATTATAATCATGTAGGTTCTATCACAGGGTTGCACCTCGAAACAACTTGGGAAAGATTGAACTAGTGCCAACTGATCTATACTAAAAGCCCGTTGGCAGTAACAACTTTTGAACAAAGAGTGATGTGCTGATTCCTTGTACATGTGGTTTGATTCAACATTTCTGAAATTAAATTTTGAAATTTTTCATATTTTCAGAATTCAATTCCCAGACGTACGTAATCACGTTTTGGAAATTAATTGGAGAA

>Glyma13g40850.7   sequence type=transcript   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTAGAGGAGTGAGAATCTTCATGATCGAGGATGGGTCTTCTTTCAAAGAAAAAATCTTAAATTAGAGTTAAGAAAAGAAAAGATCTTTGTACAAATCTGAACTGCCACCCATAAAAAAAGTGTTCCGAAATCCCAAAATGCCCTCTTAAGCTTACACAGCCTTGTTCAATCTGGTGGGTCATACATATTACATAGCAAATGCAGTTATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGAGGGTTCACAATGGAGATGACTGGAAATCTTGGTGAGAATGTGCTGATTCCATGTAGCTTAGATTGTAGGCGGGAATGGGATTATCCACGTGCCTTAATTATCTTAACCTATAAGCAGATATTGTTCTATTTCACTGATTATAATCATGTAGGTTCTATCACAGGGTTGCACCTCGAAACAACTTGGGAAAGATTGAACTAGTGCCAACTGATCTATACTAAAAGCCCGTTGGCAGTAACAACTTTTGAACAAAGAGTGATGTGCTGATTCCTTGTACATGTGGTTTGATTCAACATTTCTGAAATTAAATTTTGAAATTTTTCATATTTTCAGAATTCAATTCCCAGACGTACGTAATCACGTTTTGGAAATTAATTGGAGAA

Coding sequences of Glyma13g40850

Limit To All Plant Sequences

>Glyma13g40850.1   sequence type=CDS   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGA

>Glyma13g40850.5   sequence type=CDS   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGA

>Glyma13g40850.6   sequence type=CDS   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGA

>Glyma13g40850.7   sequence type=CDS   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTGGCATCAAATCATCATCATCAACAACAACAACAGTACCACGGTCCTGCCTTACCGATGATGCCAACCCCACTCCAAGTTCGGAGGAGGCCTGTCTTTGAATTTGATGATGAGCATCTTCAGAATCAAAAGCCCACCATTCCAATGGAATTGCAGATTGTCAGTTCCCAACAACATTTTCGTCTTCCCGATGGTTGGGTGGTCGAGAAAAAGCCCCGTCCCTCTCACGAGTCTCGTTTTGACAAGTATTACTATGAGCCAGGCACCGGAAGGAAATTTCGTTCTTTGTTATCTGTTCAGAGACATCTAGCAGGAGAAACAAGAGACTATGTTGTTGCTAACACAATGATGTCAAAAAATGAAAACACTAATTTTATTGAGTCTGGGTCAGGACAGAAGTTCGGTTCCTTGAGAGCTCTTGATAATTTCTTATCTGAAGAAAATGCATGTACAACAACACCTAAGTCTGCAGTGAAATCAGGCACTGGAGAGCAAAGAGCTTGTGGTGTGAGAAGTGGCCAAAAAGCTGTCCATAAAGGCTCTTCTGTAGGAGAAGAAGTACAAATCACTCCAAAGTCCTTGAAACACACTATTCAATCTGCACTTTCTGAGAAATCAGATTCTCGGAAGAAAACCAAGTCGGAGAAGGACAACAGAGCTTCCATGCATAACTTAACTGTACCACCACCAGCAAAAGTAAGCTGGGTTCTGTCTGGTTCCGGGGGGTTCTGGAGCCCTTTCCTTGATGATTCCATTGTACCAGAACCTGAAAAGATGAAATGGTCCAAAGCATTTGTACTATCAATCCATGATGATGGAGATATTAATGGACTTAATAGCTGA

Predicted protein sequences of Glyma13g40850

Limit To All Plant Sequences

>Glyma13g40850.1   sequence type=predicted peptide   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLASNHHHQQQQQYHGPALPMMPTPLQVRRRPVFEFDDEHLQNQKPTIPMELQIVSSQQHFRLPDGWVVEKKPRPSHESRFDKYYYEPGTGRKFRSLLSVQRHLAGETRDYVVANTMMSKNENTNFIESGSGQKFGSLRALDNFLSEENACTTTPKSAVKSGTGEQRACGVRSGQKAVHKGSSVGEEVQITPKSLKHTIQSALSEKSDSRKKTKSEKDNRASMHNLTVPPPAKVSWVLSGSGGFWSPFLDDSIVPEPEKMKWSKAFVLSIHDDGDINGLNS*

>Glyma13g40850.5   sequence type=predicted peptide   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLASNHHHQQQQQYHGPALPMMPTPLQVRRRPVFEFDDEHLQNQKPTIPMELQIVSSQQHFRLPDGWVVEKKPRPSHESRFDKYYYEPGTGRKFRSLLSVQRHLAGETRDYVVANTMMSKNENTNFIESGSGQKFGSLRALDNFLSEENACTTTPKSAVKSGTGEQRACGVRSGQKAVHKGSSVGEEVQITPKSLKHTIQSALSEKSDSRKKTKSEKDNRASMHNLTVPPPAKVSWVLSGSGGFWSPFLDDSIVPEPEKMKWSKAFVLSIHDDGDINGLNS*

>Glyma13g40850.6   sequence type=predicted peptide   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLASNHHHQQQQQYHGPALPMMPTPLQVRRRPVFEFDDEHLQNQKPTIPMELQIVSSQQHFRLPDGWVVEKKPRPSHESRFDKYYYEPGTGRKFRSLLSVQRHLAGETRDYVVANTMMSKNENTNFIESGSGQKFGSLRALDNFLSEENACTTTPKSAVKSGTGEQRACGVRSGQKAVHKGSSVGEEVQITPKSLKHTIQSALSEKSDSRKKTKSEKDNRASMHNLTVPPPAKVSWVLSGSGGFWSPFLDDSIVPEPEKMKWSKAFVLSIHDDGDINGLNS*

>Glyma13g40850.7   sequence type=predicted peptide   gene model=Glyma13g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLASNHHHQQQQQYHGPALPMMPTPLQVRRRPVFEFDDEHLQNQKPTIPMELQIVSSQQHFRLPDGWVVEKKPRPSHESRFDKYYYEPGTGRKFRSLLSVQRHLAGETRDYVVANTMMSKNENTNFIESGSGQKFGSLRALDNFLSEENACTTTPKSAVKSGTGEQRACGVRSGQKAVHKGSSVGEEVQITPKSLKHTIQSALSEKSDSRKKTKSEKDNRASMHNLTVPPPAKVSWVLSGSGGFWSPFLDDSIVPEPEKMKWSKAFVLSIHDDGDINGLNS*

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