Glyma13g40830 - SoyBase

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Report for Sequence Feature Glyma13g40830

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41273370
stop:	41275061
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46130	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 48 \| chr3:16945433-16946376 FORWARD LENGTH=256	SoyBase	E_val: 8.00E-84	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1MDI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=fabids RepID=I1MDI3_SOYBN	SoyBase	E_val: 2.00E-162	ISS
UniRef100_Q0PJI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB139 n=2 Tax=Glycine max RepID=Q0PJI3_SOYBN	SoyBase	E_val: 2.00E-159	ISS

Expression Patterns of Glyma13g40830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40830

Paralog	Evidence	Comments
Glyma15g04620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g333200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40830

Limit To All Plant Sequences

>Glyma13g40830.4   sequence type=transcript   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTATATAAATGTTGGTGATGGTTGCATAGGTCCCCGCAAGAGCTATAGCTTGAGAGAAAAAATATTCCATTTCCAGAATTAGTAGCACTAGTGCTCTCTTTTGTTTCGAAAAAAATGGTTCAACAGGAAGTGCGTAAAGGTCCTTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGATTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTAAGGTGGGTTAATTACCTACATCCTGGCCTCAAGCGTGGAAAGATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAATATTATTATTCTTTTTTCCGATCAATATTTTGTTCATAGCATATCATCATGTGTGCCACCTTATAAAGTCTAACCTGTATAGCATTGCATCTTTAAGGCTTTTGGAAGGGTTCACCCCTAGCTAGTGTGACCCAGCTGTAATAATTTCATTTTCAGGCATAACTCTAGTCTATGTTCCTTGTTTCAGTGGTTTTACTTTCGAAAAACATCCAATAGGATAGCGAGTTGGTATGTTCTGAATGTAAAATATCAAGCACTTGTTTGCATCTAAGAGTTTTTAATTTTAATTTTAATCCCATCTACACTTCTACCAATA

>Glyma13g40830.5   sequence type=transcript   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTATATAAATGTTGGTGATGGTTGCATAGGTCCCCGCAAGAGCTATAGCTTGAGAGAAAAAATATTCCATTTCCAGAATTAGTAGCACTAGTGCTCTCTTTTGTTTCGAAAAAAATGGTTCAACAGGAAGTGCGTAAAGGTCCTTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGATTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAAGGTGGCGGGAGAAAGTAAAATAGGCATTAGACAAAAAAAATCAAATGCTTATTTGGGCATCATGCTACAAAAAAATATAGATTATGGAAGAAGAAGCCTTTAACCACCTCATTTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTAAGGTGGGTTAATTACCTACATCCTGGCCTCAAGCGTGGAAAGATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAATATTATTATTCTTTTTTCCGATCAATATTTTGTTCATAGCATATCATCATGTGTGCCACCTTATAAAGTCTAACCTGTATAGCATTGCATCTTTAAGGCTTTTGGAAGGGTTCACCCCTAGCTAGTGTGACCCAGCTGTAATAATTTCATTTTCAGGCATAACTCTAGTCTATGTTCCTTGTTTCAGTGGTTTTACTTTCGAAAAACATCCAATAGGATAGCGAGTTGGTATGTTCTGAATGTAAAATATCAAGCACTTGTTTGCATCTAAGAGTTTTTAATTTTAATTTTAATCCCATCTACACTTCTACCAATA

>Glyma13g40830.6   sequence type=transcript   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTATATAAATGTTGGTGATGGTTGCATAGGTCCCCGCAAGAGCTATAGCTTGAGAGAAAAAATATTCCATTTCCAGAATTAGTAGCACTAGTGCTCTCTTTTGTTTCGAAAAAAATGGTTCAACAGGAAGTGCGTAAAGGTCCTTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGATTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTAAGGTGGGTTAATTACCTACATCCTGGCCTCAAGCGTGGAAAGATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAATATTATTATTCTTTTTTCCGATCAATATTTTGTTCATAGCATATCATCATGTGTGCCACCTTATAAAGTCTAACCTGTATAGCATTGCATCTTTAAGGCTTTTGGAAGGGTTCACCCCTAGCTAGTGTGACCCAGCTGTAATAATTTCATTTTCAGGCATAACTCTAGTCTATGTTCCTTGTTTCAGTGGTTTTACTTTCGAAAAACATCCAATAGGATAGCGAGTTGGTATGTTCTGAATGTAAAATATCAAGCACTTGTTTGCATCTAAGAGTTTTTAATTTTAATTTTAATCCCATCTACACTTCTACCAATA

Coding sequences of Glyma13g40830

Limit To All Plant Sequences

>Glyma13g40830.1   sequence type=CDS   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGATCACCATGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA

>Glyma13g40830.4   sequence type=CDS   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAACAGGAAGTGCGTAAAGGTCCTTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGATTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTAAGGTGGGTTAATTACCTACATCCTGGCCTCAAGCGTGGAAAGATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA

>Glyma13g40830.5   sequence type=CDS   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA

>Glyma13g40830.6   sequence type=CDS   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCGTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA

Predicted protein sequences of Glyma13g40830

Limit To All Plant Sequences

>Glyma13g40830.1   sequence type=predicted peptide   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPQEERLVLELHSKWGNRSPWWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG*

>Glyma13g40830.4   sequence type=predicted peptide   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG*

>Glyma13g40830.5   sequence type=predicted peptide   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG*

>Glyma13g40830.6   sequence type=predicted peptide   gene model=Glyma13g40830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG*

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