SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01470 | AT | Annotation by Michelle Graham. TAIR10: tonoplast intrinsic protein 1;3 | chr4:625092-625850 REVERSE LENGTH=252 | SoyBase | E_val: 1.00E-140 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0015840 | GO-bp | Annotation by Michelle Graham. GO Biological Process: urea transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015204 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF54 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_I1M4S8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4S8_SOYBN | SoyBase | E_val: 1.00E-175 | ISS |
| UniRef100_Q39883 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-26 n=1 Tax=Glycine max RepID=Q39883_SOYBN | SoyBase | E_val: 1.00E-174 | ISS |
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Glyma13g40820 not represented in the dataset |
Glyma13g40820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g04630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g333100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40820.2 sequence type=transcript gene model=Glyma13g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTAAACTCCGCTAGCTATAGTGTTGTGTAATACTATATAACACCCGTAACAATTGCACAAAAGTTCCTAACAACGACTTAAGGCATTCTCTCTTCTATTCTATTCTAAACTCGAAACAATCTTAGAGAAAGAAGCAGAAGAAAATGCCGATTTCTAGAATTGCCATTGGAAATTCTTCGGAGTTGAACCAATCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCCGGGGAAGGCTCTGGAATGGCTTATAGTAAAGTTCTTCCTATTTATTTATTCAACTTTATGTTGGTTGGAACATGCATGTAGTAATATGTATCAAGAGTTTTATACACATCCAACTATAAATAAGTTTACTGACTTCTACGATAACACATAACTACGTTAAAAGTCACGGGAACAATGATTTCTAATTAGTAAACATAGAAATTAAACTCGTACTAATAACTTGTGTTATGCTTGATTGGACAGATAAGCTGACAAACAATGGTTCAGCAACACCAGCAGGGTTAGTGGCAGCATCACTGTCACATGCCTTTGCACTTTTTGTTGCGGTCTCTGTTGGAGCCAACATTTCTGGCGGTCATGTAAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACCCTCTTTAGAAGCATCTTGTACTGGATTGCTCAGTTACTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTTGCACTATCTCCTGGGGTGGAAGCAGGGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGATCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATCGTTGGTGCGAACATCTTGGCGGGGGGTGCATTTGATGGTGCATCCATGAACCCTGCAGTGTCGTTTGGGCCTGCTGTTGTCAGTTGGACCTGGTCTAACCACTGGGTTTATTGGGTCGGCCCATTTGCTGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTCTTCATTAGCCCAAACACTCATGAACAGCTCCCCGTCACAGATTATTAGAGCTTAACTCTCTGCCTTCCTTTGTTGTCACTGCTCTGTGTTTTTTTGTTTTGCATTTGCTTGTTTTCAAATGTTGGTTCTCTGAACTTTGTAACATGAACATCTTTTTCTTTTTTTTTCATTATGAAATGTTCATTTCATCTAAACTAGAATTATTGTGTTAGCCAAGCTTCATTGCAAGTTAAATTTAATCATTCGTGAGAAGAGAATTGCTGGAGTCGACAGAGGCATAAACCTGTGTTAGATTACCAAGGAACATCAAGCATCAATTGTTGAAAAAAAAAAAACCTCTCACATAACAATGATGGTCAAATATAGG
>Glyma13g40820.1 sequence type=CDS gene model=Glyma13g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGATTTCTAGAATTGCCATTGGAAATTCTTCGGAGTTGAACCAATCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCCGGGGAAGGCTCTGGAATGGCTTATAATAAGCTGACAAACAATGGTTCAGCAACACCAGCAGGGTTAGTGGCAGCATCACTGTCACATGCCTTTGCACTTTTTGTTGCGGTCTCTGTTGGAGCCAACATTTCTGGCGGTCATGTAAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACCCTCTTTAGAAGCATCTTGTACTGGATTGCTCAGTTACTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTTGCACTATCTCCTGGGGTGGAAGCAGGGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGATCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATCGTTGGTGCGAACATCTTGGCGGGGGGTGCATTTGATGGTGCATCCATGAACCCTGCAGTGTCGTTTGGGCCTGCTGTTGTCAGTTGGACCTGGTCTAACCACTGGGTTTATTGGGTCGGCCCATTTGCTGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTCTTCATTAGCCCAAACACTCATGAACAGCTCCCCGTCACAGATTATTAG >Glyma13g40820.2 sequence type=CDS gene model=Glyma13g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGATTGGACAGATAAGCTGACAAACAATGGTTCAGCAACACCAGCAGGGTTAGTGGCAGCATCACTGTCACATGCCTTTGCACTTTTTGTTGCGGTCTCTGTTGGAGCCAACATTTCTGGCGGTCATGTAAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACCCTCTTTAGAAGCATCTTGTACTGGATTGCTCAGTTACTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTTGCACTATCTCCTGGGGTGGAAGCAGGGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGATCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATCGTTGGTGCGAACATCTTGGCGGGGGGTGCATTTGATGGTGCATCCATGAACCCTGCAGTGTCGTTTGGGCCTGCTGTTGTCAGTTGGACCTGGTCTAACCACTGGGTTTATTGGGTCGGCCCATTTGCTGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTCTTCATTAGCCCAAACACTCATGAACAGCTCCCCGTCACAGATTATTAG
>Glyma13g40820.1 sequence type=predicted peptide gene model=Glyma13g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPISRIAIGNSSELNQSDALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSPGVEAGNALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWVGPFAGAAIAAVVYEIFFISPNTHEQLPVTDY* >Glyma13g40820.2 sequence type=predicted peptide gene model=Glyma13g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLDWTDKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSPGVEAGNALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWVGPFAGAAIAAVVYEIFFISPNTHEQLPVTDY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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