Glyma13g40810 - SoyBase

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Report for Sequence Feature Glyma13g40810

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41265067
stop:	41267292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59613	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). \| chr5:24015726-24016500 REVERSE LENGTH=55	SoyBase	E_val: 4.00E-18	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005750	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III	SoyBase	N/A	ISS
GO:0005753	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial proton-transporting ATP synthase complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D5FNB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial ATP synthase 6kDa subunit n=1 Tax=Capsicum annuum RepID=D5FNB4_CAPAN	SoyBase	E_val: 1.00E-16	ISS
UniRef100_I1M4S7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4S7_SOYBN	SoyBase	E_val: 4.00E-82	ISS

Expression Patterns of Glyma13g40810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40810

Paralog	Evidence	Comments
Glyma15g04641	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g333000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40810

Limit To All Plant Sequences

>Glyma13g40810.1   sequence type=CDS   gene model=Glyma13g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTTCGATCCATGGCCTGTATTCTTCAAGCGAGAATGGAAGCGTAACTGGCCCTTCTTGGTTGGATTCGCCGTCACCGGAACTCTCATCACCAAACTTTCTCTTGGTCTCTCTGCTAACGTCCTTCTCCTCCTCCTTCTTCGCCAACCTCCAAAATTGGATTTTTGTTCTGAGTCTGATTTCCCTTTTCGCAGAGGAGGAAGCCACAAAGTCAAAATTCGTCCAGGCACACAAGAGGTGACTTTGGAATGGAAGATTTGCAGTGACTTTGCACATTGTATTAGATGTGTGAAGAGAGCTTTGCTTGTAATAAATGAAGAGAGATGTTGTATACACTCCATGTTCCTATTACCATTTTAG

Predicted protein sequences of Glyma13g40810

Limit To All Plant Sequences

>Glyma13g40810.1   sequence type=predicted peptide   gene model=Glyma13g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLFDPWPVFFKREWKRNWPFLVGFAVTGTLITKLSLGLSANVLLLLLLRQPPKLDFCSESDFPFRRGGSHKVKIRPGTQEVTLEWKICSDFAHCIRCVKRALLVINEERCCIHSMFLLPF*

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