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Report for Sequence Feature Glyma13g40771

Feature Type:gene_model
Chromosome:Gm13
Start:41245184
stop:41249716
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g40771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59750AT Annotation by Michelle Graham. TAIR10: DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=509 SoyBaseE_val: 1.00E-128ISS
GO:0009231GO-bp Annotation by Michelle Graham. GO Biological Process: riboflavin biosynthetic process SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003935GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP cyclohydrolase II activity SoyBaseN/AISS
GO:0008686GO-mf Annotation by Michelle Graham. GO Molecular Function: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity SoyBaseN/AISS
PTHR21327Panther GTP CYCLOHYDROLASE II-RELATED JGI ISS
PF00925PFAM GTP cyclohydrolase II JGI ISS
PF00926PFAM 3,4-dihydroxy-2-butanone 4-phosphate synthase JGI ISS
UniRef100_B9T7Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP cyclohydrolase II, putative n=1 Tax=Ricinus communis RepID=B9T7Y3_RICCO SoyBaseE_val: 4.00E-139ISS
UniRef100_UPI000233ADAAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ADAA related cluster n=1 Tax=unknown RepID=UPI000233ADAA SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g40771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g40771 not represented in the dataset
Glyma13g40771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g40771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g332600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g40771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma13g40771
>Glyma13g40771.2   sequence type=transcript   gene model=Glyma13g40771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTTCATTCCCTCATCCTTTGATTTCCCACGTCATCACTAGCTCAAGTGCAAGACTAGGCCTTTGGAAGAACAAAGTGTGGAACTCAGCTTGTTGTGCTGTTGGGTTTTCTGGGGTTGGAATAGAAGACGTGTTTGACGATAGTAATTTGAAGATAAATGAAAATGGATCCCTCTTAGGTGCCTTAAATAATAATAACGAGTCTTCTTCAGCTTCATTTGAAACGTTAGACTCTGAAATAACACCAGAAACCACTAATTTCTTTGTCAGTGATGCCGAAGGTGATCCAGATTGCCCCTCTAAAGGCTATTCTTCCATCGAACAGGCGCTTAATGCATTAAGCCAAGGCAAGTTTGTGATTGTGGTTGATGATGAAAACGGGGATGTTGAAGGAAATCTTATAATGGCAGCATCTCTTACTAGTCCAAAGGACATCGCTTTTATGATTAAGCACGGATCAGGGATCGTTTCTGTTGGCATGAAAGACGAGGATCTTCAAAGACTGAACCTCCCTCTTATGTCACCAGAGACTGAAGATGAGGATTCTTCTGCTCCCACCTTCAAGTTAGCATCGGAACACACCTTACCAATTGGCTCAATAACTGATTTGATAAGGTATCGGAGAAAGAGAGAAAAATTAGTTGAAAGAACTTCAGTGTCTCGCCTGCCTACAAAATGGGGTGTATTTCAAGCATATTGCTACAGCTCAAAGTTGGATGGAACTGAACATGTGGCTGCTGTAAAGGGAGACATAGGAGATGGACAAGATGTGCTAGTACGAGTCCATTCAGAATGTTTAACTGGGGATATAGTTGGATCAGCTCGGTGTGACTGTGGCAACCAGTTAGATTTGGCAATGCGGTTAATAGAAGAAGCAGGTAGAGGAGTAGTTGTGTATCTTCGAGGTCATGAAGGAAGAGGCATTGAACTTGGTCACAAACTTAAAGCATATAATTTGCAGGATCAAGGTCATGACACGGTCCAAGCAAACATAGAACTCGGCTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCACAGATTTTGAGGGACATAGGAGTTCGAACAATGTGGCTTATGACTAACAACCCAGCAAAGTTTGTTGGTCTTAAAGGATATGGTTTGGCTGTGTTGACACCAATCACAGAGGAAAACAAGAGATACTTGGAAACAAAAAGGACCAAAATGGGTCATATTTATGGCTCTGATTTACAAGGATCATTACCTGGATTCAACGATTCTATTGTAAATAACGGAGACTCACCGGTGAACACATAGTCTACACAAAATATACGGCAAAAAAGAAGAAAAAGAAATTCTCATATAGTGTAAAAAGTTATTTAGAGGATGAAATTCATTTGTGAAAATTGTATTCAGTTTACTTTACGTATAGCTAATTAAAAAAATTATATTCAATGAAATTTACATTAATTTATATATTTATTCTTGTTTATTTAAATTTAATATATAAAAAATATATTTATTCTTGAGCGAAAAAATATATTATTAATGAAACATGCAAAAAATGGAATTAAATTAAACTAATATTCAAGTATTTTTAATAATCTTTACGGTATTGGGTTTGGATGCTCACGCTTGTTAATGGGTCTAGGCCCATGGGTCATGACGGAAACCATTCCATTGGTAGCCCGTATATAATATGGAACCAAACCCTAAACCTCGCCGTTGCCTCTGCCTCTCACCCGCAGGTTGTGCTCTATTCCCCCATTCTCTCTCCGTTTAGTTCACAGTATATTTCACCAGCCTTATCTTCATCTTCTTTTTCTTTTAGGGTTTAGAGAAAATTTAACAATTAGGGTTGCTTCTCCTTTGCCGACCCATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAACTGCCAAGGCAGTTAAGTCCGGTGCTAACTTTAAGAAGAAGACCAAGAAGATCCGAACATCTGTTACCTTCCATCGACCAAGGACTTTGAAAAAGGATAGGAACCCCAAATATCCACGCATTAGTGCTCCACCCAGGAACAAGCTTGATCACTATCAGATATTGAAGTTTCCTCTCACGACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCTCACCAAAGTAGATTTCTGTTTAGATGGTAGTTTGTTATGGGGTGTTGAGGGGAGACATTTGAAGCAACATTAAGTTATAAATTTTCGGTTTGTTATCTGGTGTATTTTAGTTCAATTGGAATTATATTTACTTTTGTTACAATTTTCAATTTGATGAGTAAATGGGCCGATATTATTTTCCAATCATATACTGAATTTAATTTTGATGCACCATTAGTTTATAAATAAGGCATTGAGTATC
Coding sequences of Glyma13g40771
>Glyma13g40771.1   sequence type=CDS   gene model=Glyma13g40771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTTCATTCCCTCATCCTTTGATTTCCCACGTCATCACTAGCTCAAGTGCAAGACTAGGCCTTTGGAAGAACAAAGTGTGGAACTCAGCTTGTTGTGCTGTTGGGTTTTCTGGGGTTGGAATAGAAGACGTGTTTGACGATAGTAATTTGAAGATAAATGAAAATGGATCCCTCTTAGGTGCCTTAAATAATAATAACGAGTCTTCTTCAGCTTCATTTGAAACGTTAGACTCTGAAATAACACCAGAAACCACTAATTTCTTTGTCAGTGATGCCGAAGGTGATCCAGATTGCCCCTCTAAAGGCTATTCTTCCATCGAACAGGCGCTTAATGCATTAAGCCAAGGCAAGTTTGTGATTGTGGTTGATGATGAAAACGGGGATGTTGAAGGAAATCTTATAATGGCAGCATCTCTTACTAGTCCAAAGGACATCGCTTTTATGATTAAGCACGGATCAGGGATCGTTTCTGTTGGCATGAAAGACGAGGATCTTCAAAGACTGAACCTCCCTCTTATGTCACCAGAGACTGAAGATGAGGATTCTTCTGCTCCCACCTTCAAGTTAGCATCGGAACACACCTTACCAATTGGCTCAATAACTGATTTGATAAGGTATCGGAGAAAGAGAGAAAAATTAGTTGAAAGAACTTCAGTGTCTCGCCTGCCTACAAAATGGGGTGTATTTCAAGCATATTGCTACAGCTCAAAGTTGGATGGAACTGAACATGTGGCTGCTGTAAAGGGAGACATAGGAGATGGACAAGATGTGCTAGTACGAGTCCATTCAGAATGTTTAACTGGGGATATAGTTGGATCAGCTCGGTGTGACTGTGGCAACCAGTTAGATTTGGCAATGCGGTTAATAGAAGAAGCAGGTAGAGGAGTAGTTGTGTATCTTCGAGGTCATGAAGGAAGAGGCATTGAACTTGGTCACAAACTTAAAGCATATAATTTGCAGGATCAAGGTCATGACACGGTCCAAGCAAACATAGAACTCGGCTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCACAGATTTTGAGGGACATAGGAGTTCGAACAATGTGGCTTATGACTAACAACCCAGCAAAGTTTGTTGGTCTTAAAGGATATGGTTTGGCTGTGTTGACACCAATCACAGAGGAAAACAAGAGATACTTGGAAACAAAAAGGACCAAAATGGGTCATATTTATGGCTCTGATTTACAAGGATCATTACCTGGATTCAACGATTCTATTGTAAATAACGGAGACTCACCGGTGAACACATAG

>Glyma13g40771.2   sequence type=CDS   gene model=Glyma13g40771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTTCATTCCCTCATCCTTTGATTTCCCACGTCATCACTAGCTCAAGTGCAAGACTAGGCCTTTGGAAGAACAAAGTGTGGAACTCAGCTTGTTGTGCTGTTGGGTTTTCTGGGGTTGGAATAGAAGACGTGTTTGACGATAGTAATTTGAAGATAAATGAAAATGGATCCCTCTTAGGTGCCTTAAATAATAATAACGAGTCTTCTTCAGCTTCATTTGAAACGTTAGACTCTGAAATAACACCAGAAACCACTAATTTCTTTGTCAGTGATGCCGAAGGTGATCCAGATTGCCCCTCTAAAGGCTATTCTTCCATCGAACAGGCGCTTAATGCATTAAGCCAAGGCAAGTTTGTGATTGTGGTTGATGATGAAAACGGGGATGTTGAAGGAAATCTTATAATGGCAGCATCTCTTACTAGTCCAAAGGACATCGCTTTTATGATTAAGCACGGATCAGGGATCGTTTCTGTTGGCATGAAAGACGAGGATCTTCAAAGACTGAACCTCCCTCTTATGTCACCAGAGACTGAAGATGAGGATTCTTCTGCTCCCACCTTCAAGTTAGCATCGGAACACACCTTACCAATTGGCTCAATAACTGATTTGATAAGGTATCGGAGAAAGAGAGAAAAATTAGTTGAAAGAACTTCAGTGTCTCGCCTGCCTACAAAATGGGGTGTATTTCAAGCATATTGCTACAGCTCAAAGTTGGATGGAACTGAACATGTGGCTGCTGTAAAGGGAGACATAGGAGATGGACAAGATGTGCTAGTACGAGTCCATTCAGAATGTTTAACTGGGGATATAGTTGGATCAGCTCGGTGTGACTGTGGCAACCAGTTAGATTTGGCAATGCGGTTAATAGAAGAAGCAGGTAGAGGAGTAGTTGTGTATCTTCGAGGTCATGAAGGAAGAGGCATTGAACTTGGTCACAAACTTAAAGCATATAATTTGCAGGATCAAGGTCATGACACGGTCCAAGCAAACATAGAACTCGGCTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCACAGATTTTGAGGGACATAGGAGTTCGAACAATGTGGCTTATGACTAACAACCCAGCAAAGTTTGTTGGTCTTAAAGGATATGGTTTGGCTGTGTTGACACCAATCACAGAGGAAAACAAGAGATACTTGGAAACAAAAAGGACCAAAATGGGTCATATTTATGGCTCTGATTTACAAGGATCATTACCTGGATTCAACGATTCTATTGTAAATAACGGAGACTCACCGGTGAACACATAG
Predicted protein sequences of Glyma13g40771
>Glyma13g40771.1   sequence type=predicted peptide   gene model=Glyma13g40771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSFPHPLISHVITSSSARLGLWKNKVWNSACCAVGFSGVGIEDVFDDSNLKINENGSLLGALNNNNESSSASFETLDSEITPETTNFFVSDAEGDPDCPSKGYSSIEQALNALSQGKFVIVVDDENGDVEGNLIMAASLTSPKDIAFMIKHGSGIVSVGMKDEDLQRLNLPLMSPETEDEDSSAPTFKLASEHTLPIGSITDLIRYRRKREKLVERTSVSRLPTKWGVFQAYCYSSKLDGTEHVAAVKGDIGDGQDVLVRVHSECLTGDIVGSARCDCGNQLDLAMRLIEEAGRGVVVYLRGHEGRGIELGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDIGVRTMWLMTNNPAKFVGLKGYGLAVLTPITEENKRYLETKRTKMGHIYGSDLQGSLPGFNDSIVNNGDSPVNT*

>Glyma13g40771.2   sequence type=predicted peptide   gene model=Glyma13g40771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSFPHPLISHVITSSSARLGLWKNKVWNSACCAVGFSGVGIEDVFDDSNLKINENGSLLGALNNNNESSSASFETLDSEITPETTNFFVSDAEGDPDCPSKGYSSIEQALNALSQGKFVIVVDDENGDVEGNLIMAASLTSPKDIAFMIKHGSGIVSVGMKDEDLQRLNLPLMSPETEDEDSSAPTFKLASEHTLPIGSITDLIRYRRKREKLVERTSVSRLPTKWGVFQAYCYSSKLDGTEHVAAVKGDIGDGQDVLVRVHSECLTGDIVGSARCDCGNQLDLAMRLIEEAGRGVVVYLRGHEGRGIELGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDIGVRTMWLMTNNPAKFVGLKGYGLAVLTPITEENKRYLETKRTKMGHIYGSDLQGSLPGFNDSIVNNGDSPVNT*






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