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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G59740 | AT | Annotation by Michelle Graham. TAIR10: UDP-N-acetylglucosamine (UAA) transporter family | chr5:24070310-24072747 REVERSE LENGTH=344 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005354 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactose transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1581 | KOG | UDP-galactose transporter related protein | JGI | ISS | |
| PTHR10778 | Panther | UDP-GALACTOSE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR10778:SF13 | Panther | UDP-GALACTOSE TRANSPORTER B1 (SLC35B1) | JGI | ISS | |
| PF08449 | PFAM | UAA transporter family | JGI | ISS | |
| UniRef100_G7IHK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine 3'-phospho 5'-phosphosulfate transporter n=1 Tax=Medicago truncatula RepID=G7IHK8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ADA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ADA9 related cluster n=1 Tax=unknown RepID=UPI000233ADA9 | SoyBase | E_val: 0 | ISS |
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Glyma13g40761 not represented in the dataset |
Glyma13g40761 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g04686 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g332500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40761.2 sequence type=transcript gene model=Glyma13g40761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCTAACAGAACACAAAACAAAATAAAACAAAACTAGTACTACTGTTTCTCAGTTAGTTTTTCTGAGTCTCCGAGGTTTAGACACACACACCTCTCTCTAACTCTAACATTCAAAATTCAATGTCGTGGGTTCGATCCCCTAGCTGAGGGTCCCACAGCCTCTTGTATTGTACTGTATGCATTTGGGATATGGCGGAATCATCCACTAGTTCTCCTGTTTCAGTTGATTCCATTCCCAGAGACAATGATAAGTTCTGGAAAGGGTCATTTACTGTCGCCGGAATCATGGTTACTCTCGTCACCTATGGTCTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGGACAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTGGTTCTTTGCTGGCAAGTAAAAAAGTGTTGGACCCGGTAGCTCCCATTTATAAGTACTGCCTTATCTCGGTTTCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAGACCCTTGCAAAATGTGCAAAAATGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAGTTACCCTTGGCTGCTCAGCATTTATCCTATATCCGGCAGGAACAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGCATTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGATTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTGTTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTATAGAATTTGTTTATCACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCGACTGTTGCCACAATTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTCTGACATTTGCAACCATAATGACCACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAGAAGACAACCCCCTCTATAGCACTTGTTCAAAATGGGGATCCAAATAATTTGAAGGACAATCTGTGACTGAGACGGAGGTAAATTTTCCTGAACTGACACCTGCTAACGTCTGCGGTGGTGATGTGACTTCAGCTTTAAGTTCAGAGTTGGACATTCAATATTTAAGATCATGGATAATTTCATTATACAGAATTGGTTTGACTTCAAATCCAGAAAGCATCAGCTGCTGCTAGATTCGCAGATTTTGGTATCACAGTCATAACAATAGAGAACTTAAAAGGATTTTAACCCCATATTTTTCGGTTGGGGAGATCAATTATAGACTGACTAGGGCCAAAAGATGCTTATAGATTGAAATATGTACAATGCATTTCCTCAAGCAAAGTTGTTACTTATGTTTTTCAGAAATGCGTAGTGGAGAGAGATTTGTTTGTGGTAATTTCCCAAACATACTGTGCAAAATTTTATGATGTTATTATCTATAAGCATACTGTGCAAAATTATAACAGGCATAGATTGTACTAACATCAGGGAACCTTGATTCCCAAGTTCATTCTG
>Glyma13g40761.1 sequence type=CDS gene model=Glyma13g40761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAATCATCCACTAGTTCTCCTGTTTCAGTTGATTCCATTCCCAGAGACAATGATAAGTTCTGGAAAGGGTCATTTACTGTCGCCGGAATCATGGTTACTCTCGTCACCTATGGTCTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGGACAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTGGTTCTTTGCTGGCAAGTAAAAAAGTGTTGGACCCGGTAGCTCCCATTTATAAGTACTGCCTTATCTCGGTTTCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAGACCCTTGCAAAATGTGCAAAAATGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAGTTACCCTTGGCTGCTCAGCATTTATCCTATATCCGGCAGGAACAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGCATTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGATTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTGTTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTATAGAATTTGTTTATCACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCGACTGTTGCCACAATTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTCTGACATTTGCAACCATAATGACCACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAGAAGACAACCCCCTCTATAGCACTTGTTCAAAATGGGGATCCAAATAATTTGAAGGACAATCTGTGA >Glyma13g40761.2 sequence type=CDS gene model=Glyma13g40761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAATCATCCACTAGTTCTCCTGTTTCAGTTGATTCCATTCCCAGAGACAATGATAAGTTCTGGAAAGGGTCATTTACTGTCGCCGGAATCATGGTTACTCTCGTCACCTATGGTCTCTTGCAGGAAAAGATCATGAGAGTGCCGTATGGGACAGAAAAGGAGTATTTCAAGCATTCACTGTTTCTTGTTTTCTGCAACCGCATCACAACATCTGCTGTTTCTGCTGGTTCTTTGCTGGCAAGTAAAAAAGTGTTGGACCCGGTAGCTCCCATTTATAAGTACTGCCTTATCTCGGTTTCAAACATACTAACTACAACTTGCCAGTATGAGGCCCTCAAATATGTTAGTTTTCCTGTTCAGACCCTTGCAAAATGTGCAAAAATGATACCAGTTATGGTCTGGGGTGCCCTCATTATGCAGAAGAGATACCAGGGACCTGACTATTTGTTGGCTTTTTTAGTTACCCTTGGCTGCTCAGCATTTATCCTATATCCGGCAGGAACAGACATGAGTCCTTACAGTAGAGGAAGGGAAAATACAGTTTGGGGCATTCTCCTAATGGTTGGCTATCTTGGGTTTGATGGATTTACAAGCACATTCCAAGATAAGTTGTTTAGAGGCTATGACATGGAGATACATAATCAGATATTTTACACAACATTGTGCTCTTGTGTTCTTAGCCTGACAGGTCTTATCTTACAAGGACATTTAATACCAGCTATAGAATTTGTTTATCACCATCATGATTGTTTCTTTGACATAGCATTGCTTTCGACTGTTGCCACAATTAGTCAATTTTTTATTTCATACACAATTCGCACCTTCGGTGCTCTGACATTTGCAACCATAATGACCACAAGACAGTTGGTGAGCATTATGCTGTCATGTGTGTGGTTTGCCCATCCTCTTAGCTGGGAACAGTGGATTGGAGCTGTCATTGTCTTTGGCTCCCTTTATGGAAAAAGCTTCTCGAGGAAAATGCCTCAGAAGACAACCCCCTCTATAGCACTTGTTCAAAATGGGGATCCAAATAATTTGAAGGACAATCTGTGA
>Glyma13g40761.1 sequence type=predicted peptide gene model=Glyma13g40761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESSTSSPVSVDSIPRDNDKFWKGSFTVAGIMVTLVTYGLLQEKIMRVPYGTEKEYFKHSLFLVFCNRITTSAVSAGSLLASKKVLDPVAPIYKYCLISVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGALIMQKRYQGPDYLLAFLVTLGCSAFILYPAGTDMSPYSRGRENTVWGILLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCVLSLTGLILQGHLIPAIEFVYHHHDCFFDIALLSTVATISQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWFAHPLSWEQWIGAVIVFGSLYGKSFSRKMPQKTTPSIALVQNGDPNNLKDNL* >Glyma13g40761.2 sequence type=predicted peptide gene model=Glyma13g40761 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESSTSSPVSVDSIPRDNDKFWKGSFTVAGIMVTLVTYGLLQEKIMRVPYGTEKEYFKHSLFLVFCNRITTSAVSAGSLLASKKVLDPVAPIYKYCLISVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGALIMQKRYQGPDYLLAFLVTLGCSAFILYPAGTDMSPYSRGRENTVWGILLMVGYLGFDGFTSTFQDKLFRGYDMEIHNQIFYTTLCSCVLSLTGLILQGHLIPAIEFVYHHHDCFFDIALLSTVATISQFFISYTIRTFGALTFATIMTTRQLVSIMLSCVWFAHPLSWEQWIGAVIVFGSLYGKSFSRKMPQKTTPSIALVQNGDPNNLKDNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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