Glyma13g40690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g40690

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41202885
stop:	41204339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59730	AT	Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein H7 \| chr5:24064096-24066004 REVERSE LENGTH=632	SoyBase	E_val: 1.00E-148	ISS
GO:0006887	GO-bp	Annotation by Michelle Graham. GO Biological Process: exocytosis	SoyBase	N/A	ISS
GO:0006904	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis	SoyBase	N/A	ISS
GO:0000145	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: exocyst	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG2344	KOG	Exocyst component protein and related proteins	JGI		ISS
PTHR12542	Panther	EXOCYST COMPLEX PROTEIN EXO70-RELATED	JGI		ISS
PTHR12542:SF7	Panther	EXOCYST COMPLEX PROTEIN EXO70	JGI		ISS
PF03081	PFAM	Exo70 exocyst complex subunit	JGI		ISS
UniRef100_G7IUA9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex component n=1 Tax=Medicago truncatula RepID=G7IUA9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M4R6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M4R6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g40690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g331800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40690

Limit To All Plant Sequences

>Glyma13g40690.1   sequence type=CDS   gene model=Glyma13g40690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAAAATGGGACTCAAAAACTTGTTCTTCTTCAAAGCATCACCATCGCCACCTTCCTCTCCTCCCACAAGAACCTTCTCCGATTCACTAATGGACCAAAACATCGAAACCGCTCGCGCCATCATTTCAAAATGGGAACTTATTTCCCCTTCTGACCAAACCGCCCCTCTATTCAGCAACACACGCCAAGAAGCCAAACAGTACCTTAACGCTGTCATGAGCCTGCAGTCCACTATGCAGCACCTCGTCGCACTGGATTCCTCCTCCGACACCCTCGTCCAAGCCCACTTCCTTATGCAACTCGCCATGAAGAGACTCCAGGCTGAGTTCTATCGAATATTAGCCCAAAACAGAGACAATCTCCATCCTGAATCCGTCGCCTCCACCGATCACCGGAGCAGCAGCGTCTCCGATGACGGCTCCGATTTCTCCGACGATGAGTTCCGCTTCGCCGGCGACTCTGTCTCCACGGTCGCCATGGCGGACCTGAAAGCCATTGCGGAGTGTATGGTTTCCGCCGGATACAGCGAAGAGTGCGTCAAGATTTACATCTTAATGAGAAAATCAATCGTAGATGAGTCACTGTATCACTTCGGAGTGGAGAGGCTGAGCTCCTCTCAGATTCAGAAGATGGACTGGGAAGCGCTCGAGTCCAAGATTAAGTCCTGGCTCAACGCTGTCAAGATCGCCGTCGGCTCTTTGTTTCACGGTGAGAGAACGCTCTGCGACTACGTCTTCGGTTCACCGGAGAGGAAGACCGCGGAGTCCTGCTTCGCCGCGATTTGCAGCGAAGGGGCTACGTCGTTGTTCGGATTCCCGGAAAAAGTTGCCAAGTGCAGCAAGAAAACGCCGGAGAAAATGTTCAGGACGCTCGACTTGTACGAAGCGATCTCTGATAACCGTCAACAAATTGAATCCATCTTCTCGTCAGAATCAACCTTCTCAATCAGATCGCAGGTACTTGCTTCTCAGGCTAGGCTGGGCGAGGCCGTTGGGACGATGCTAAACAACTTCGAATCCGCGATTCAAAAGGAATCCTCCAAGATTCCCATGCCTGGCGGCGAGATCCACCCGCTCACGCGTTACGTCATGAACTACATCGCGTTCCTGGGCGATTACGGCGACGGGCTCGCGGAGATAGTCGGCGATTGGCGTAAAAATTCGTTGCCGGAGTGTTACTACCGAAGTCCCGATCGCGAGGGAAAGAAAGGGTCATCGGAGATAGCTGAACGGATGGCGTGGCTGATATTAGTGCTCCTCTGTAAGCTGGACAGAAAAGCTGAACTCTACAAAGAGGTTGCACTCTCTTATCTGTTCCTGGCGAATAACGTGCAATACGTCGTCGTAAAGGTCCGCAACACAAACCTAGGGTTGATCCTTGGGGAGGATTGGTTGACGAAGCACGAGTTGAAGGTGAAAGAGTATGTTTCCAAGTACGACCAAGCATCTTGA

Predicted protein sequences of Glyma13g40690

Limit To All Plant Sequences

>Glyma13g40690.1   sequence type=predicted peptide   gene model=Glyma13g40690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKMGLKNLFFFKASPSPPSSPPTRTFSDSLMDQNIETARAIISKWELISPSDQTAPLFSNTRQEAKQYLNAVMSLQSTMQHLVALDSSSDTLVQAHFLMQLAMKRLQAEFYRILAQNRDNLHPESVASTDHRSSSVSDDGSDFSDDEFRFAGDSVSTVAMADLKAIAECMVSAGYSEECVKIYILMRKSIVDESLYHFGVERLSSSQIQKMDWEALESKIKSWLNAVKIAVGSLFHGERTLCDYVFGSPERKTAESCFAAICSEGATSLFGFPEKVAKCSKKTPEKMFRTLDLYEAISDNRQQIESIFSSESTFSIRSQVLASQARLGEAVGTMLNNFESAIQKESSKIPMPGGEIHPLTRYVMNYIAFLGDYGDGLAEIVGDWRKNSLPECYYRSPDREGKKGSSEIAERMAWLILVLLCKLDRKAELYKEVALSYLFLANNVQYVVVKVRNTNLGLILGEDWLTKHELKVKEYVSKYDQAS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain