Glyma13g40640 - SoyBase

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Report for Sequence Feature Glyma13g40640

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41140329
stop:	41144029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46290	AT	Annotation by Michelle Graham. TAIR10: hercules receptor kinase 1 \| chr3:17013009-17015501 FORWARD LENGTH=830	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF785	Panther		JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_C6ZRT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6ZRT9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ADA2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ADA2 related cluster n=1 Tax=unknown RepID=UPI000233ADA2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40640

Paralog	Evidence	Comments
Glyma15g04790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g331300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40640

Limit To All Plant Sequences

>Glyma13g40640.2   sequence type=transcript   gene model=Glyma13g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGTCAATTTTCCTGCAATTTGGAAGCACTACCACATGAACACTTTCACTTTCACACCGGAAGGCACGAGCACGACTTTCCCTTCTATTATTTGGCTCATCCATTCCGTATTCACATTTAAGCGTCGATTACTTTTATTTAATACAATACATTAAAGTTCAAACTACCTTACCAAAAAAAAACCAAAATTGTCAAATCAATCCAGTGGTATTTTCTTTGTTAATTCTCCATCTGTTTTCCTCTTCTTACTAATATTCCTTTAATATTATAATTAATTAATTCATCTTCCTCTTTTATTGCTCTGGATCACAACTTACCTAAACACACTATGCCTGACCTATCTCAATTTGTTTAATCTCTTCATTTGCATAATTGCATCACACATGCTTTCACCGAATTTTCTTGCAACCAAACCCTTTTGTGTGTTGACCCTGCTTCCACCGTTTCTGTTCCTTCACCTCCCCTCTCTCTCTATATTTTCCTTTTTAAAAAATCGAAATAATAAAAAAAATATGAATGAATATGTCAAAAGTTAAGGTTGTCATTGAGATTATTCCAGCTTGTGCTGAGCTAGATTCTTGCTGAAGTGGATTTGTTCTTCTCCTGTCAGTATCTGTATTAAAGTTTCTTTCAAAACCACAAAAAGGGGCCACTTCAGATTTCTCTTATTCTCCCGGGTTTGGTTCATACTTGTTCTGCAACTTCTGCCGGAAACTATAAGAGTAATAACCAAGATAATTATCTTATAGACTGTGGAGCAACTGCAAGTACTTCAGTAGGTACACGCAATTTCATAGCAGATAACAACAAGGATCTCCTTTCCACACAAGAAGATATTCTTGCCACTACCTCCTTAAAATCAGTTACTTCTTCCTCCGATGATTTGCCTCTCTATCAAACTGCAAGAGTCTTCACTGGATCCTCAAAGTACACTTTTAAAATTAAGCAGAAGGGGAGGCACTGGATCCGTCTCTATTTCTTTCCATCCACTTATGAAAAGTACAATTTGAGTGCTGCAGATTTCACTGTTTCCACCCAAAACCATGTCCTTTTCAGAAGCCTCAACATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCAGACACCCTTGTTCTCACTTTTACCCCTTCAGGAAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTACTCTGACCCCTATAAATGACACCCTTCAAAGAACTTGGGTTCCAGATCAAAGTTTCCTTTTGGAACCCAACCTTGCCTCAAATTTTTCCAATATTAAGGGTGTTAAATACGAGAACCGCGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTACGGGACTCTCACACAGATGAACTCAAGCAATGATCCCCGTAGTATTTTCAATGTGACATGGCAGTTTGATGTGAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGCGATGTAGTCAGTAAAGCTCTCAATGTACTCATCTTCAATGCTTATGTAGACTCCAAGCTCGCTGCCTCCAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATATTATAGGGATCTGGTTACAGCCGTGGCAGTAAGCAAAACACTTCGTGTAGGTATTGGTCCTTCAGATCTAAATAAGGATTACCCTAATGCCATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATGGGTAATCTTATACCAGGAGCAGGATCTGTGGCTATTACTTCTGGCTCAAGTTCTAAGAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTGGTTGGTGCTGTTGTCTTGGCTGGACTTTTCTTTGTACTATGCAGGAAAAGAAGAAGGTTGGTGCAAAGGCAGTCAAAGACATGGGTTCCTCTATCCATAAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGTGTCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTCGATGAGAGTTGGGTTATTGGGATAGGTGGTTTCGGAAAAGTGTACAAGGGAGAGTTGAGTGATGGCACTAAAGTGGCAGTTAAGAGGGGGAATCCACGGTCCCAGCAGGGTCTTGCAGAATTCCGAACTGAAATTGAAATGCTGTCTCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGAGCAAATCATAGATCAAACACTTGCAGGCAAAATCAGACCAGATTCTCTGAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTGGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCAGTGGTTCAAGGCGACCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCTCAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCGGTTACACAATTTGCAGGCTCAGGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAGATGGTTCTGGATATCCTATCTTATAAATTCTGTGTGACAGTACTCTTCTGTTATAATTTTTGTTGTTTTTCTTCTGATCACTAGCTCTCCGCCACGACTTGGAAGATTAGAAACTTCATATCATAGATTTGTAAAGAAAGATTTGAGTTAATGAAACATATATGTTTGCTTAATTGGTAATCAGAGCATCTACTTGTTAAAACTCTGGCTTCTCGAGTTCGAATTGAACTATCTTGAAAAACCAGTGTAAGTTATGCAACCACCCAGGTGTACCTTATCAGCTGGAGAAATACCTGAATCAGCAAGTGTGGCAAAGTTCTCTGATTAAACTGCCATATAGAGTTGGGTTAGATGTTTTGGTTTTATATCTCTTATACTTATTTGTGACCAGAGAGGGTATTGTAGGAGTGGGTTTTAGCCTTTTAGGCAACTGGCGGGCATGGAGTTTCTCTGAAATAATACGGCACATGTATTTGCATTTGTTACTGTGCATTTGGTGTTAATACGAGTTGCATGGTTTGTTATATTCTCGGTCATTTATTTCCTCCACTCTATTTCTGATGTACTTGCTGTTAATACAAGCTACATGGTTTATCATATATTCAGTCATTTATTTCCTCACTTGATTTCTGATGTATTTGCTGTTAATACAAGCTGCATGGTTTTTCATAT

Coding sequences of Glyma13g40640

Limit To All Plant Sequences

>Glyma13g40640.1   sequence type=CDS   gene model=Glyma13g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGATTATTGGAGAAATATTGGTTTCTTTATATGTGTTTTATCAATCTTCCCCCTTGTGTGCTTCTGTGCCACCTTTGTTCCAGTAGATAATTATCTTATAGACTGTGGAGCAACTGCAAGTACTTCAGTAGGTACACGCAATTTCATAGCAGATAACAACAAGGATCTCCTTTCCACACAAGAAGATATTCTTGCCACTACCTCCTTAAAATCAGTTACTTCTTCCTCCGATGATTTGCCTCTCTATCAAACTGCAAGAGTCTTCACTGGATCCTCAAAGTACACTTTTAAAATTAAGCAGAAGGGGAGGCACTGGATCCGTCTCTATTTCTTTCCATCCACTTATGAAAAGTACAATTTGAGTGCTGCAGATTTCACTGTTTCCACCCAAAACCATGTCCTTTTCAGAAGCCTCAACATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCAGACACCCTTGTTCTCACTTTTACCCCTTCAGGAAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTACTCTGACCCCTATAAATGACACCCTTCAAAGAACTTGGGTTCCAGATCAAAGTTTCCTTTTGGAACCCAACCTTGCCTCAAATTTTTCCAATATTAAGGGTGTTAAATACGAGAACCGCGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTACGGGACTCTCACACAGATGAACTCAAGCAATGATCCCCGTAGTATTTTCAATGTGACATGGCAGTTTGATGTGAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGCGATGTAGTCAGTAAAGCTCTCAATGTACTCATCTTCAATGCTTATGTAGACTCCAAGCTCGCTGCCTCCAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATATTATAGGGATCTGGTTACAGCCGTGGCAGTAAGCAAAACACTTCGTGTAGGTATTGGTCCTTCAGATCTAAATAAGGATTACCCTAATGCCATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATGGGTAATCTTATACCAGGAGCAGGATCTGTGGCTATTACTTCTGGCTCAAGTTCTAAGAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTGGTTGGTGCTGTTGTCTTGGCTGGACTTTTCTTTGTACTATGCAGGAAAAGAAGAAGGTTGGTGCAAAGGCAGTCAAAGACATGGGTTCCTCTATCCATAAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGTGTCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTCGATGAGAGTTGGGTTATTGGGATAGGTGGTTTCGGAAAAGTGTACAAGGGAGAGTTGAGTGATGGCACTAAAGTGGCAGTTAAGAGGGGGAATCCACGGTCCCAGCAGGGTCTTGCAGAATTCCGAACTGAAATTGAAATGCTGTCTCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGAGCAAATCATAGATCAAACACTTGCAGGCAAAATCAGACCAGATTCTCTGAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTGGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCAGTGGTTCAAGGCGACCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCTCAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCGGTTACACAATTTGCAGGCTCAGGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAG

>Glyma13g40640.2   sequence type=CDS   gene model=Glyma13g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAGATCCTGTGATGAAGGAGTACTCAGTGAATGTGACCTCAGACACCCTTGTTCTCACTTTTACCCCTTCAGGAAATTCCACTGCTTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCTGATGACCTAATTGTTGATGATGGTTTTGCCTTAGATCCATCAGTAACCTCTTCTGGGTTGGTGACACAAGCACTTGAGACAGTTTGGAGGGTTAACATGGGTGGTCCTACTCTGACCCCTATAAATGACACCCTTCAAAGAACTTGGGTTCCAGATCAAAGTTTCCTTTTGGAACCCAACCTTGCCTCAAATTTTTCCAATATTAAGGGTGTTAAATACGAGAACCGCGGGCAAGCAACAGAAAACACTGCTCCGCCTACCGTTTACGGGACTCTCACACAGATGAACTCAAGCAATGATCCCCGTAGTATTTTCAATGTGACATGGCAGTTTGATGTGAGTCCCGGATTTCAGTACCTTGTTCGACTTCACTTCTGCGATGTAGTCAGTAAAGCTCTCAATGTACTCATCTTCAATGCTTATGTAGACTCCAAGCTCGCTGCCTCCAGTGCTGATCCCAGTACTACTAGCAATAATGCTTTGGGTGTTCCATATTATAGGGATCTGGTTACAGCCGTGGCAGTAAGCAAAACACTTCGTGTAGGTATTGGTCCTTCAGATCTAAATAAGGATTACCCTAATGCCATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATGGGTAATCTTATACCAGGAGCAGGATCTGTGGCTATTACTTCTGGCTCAAGTTCTAAGAAAACTGGCATGATTGTGGGTGTGAGTGTTGGGGTGGTTGGTGCTGTTGTCTTGGCTGGACTTTTCTTTGTACTATGCAGGAAAAGAAGAAGGTTGGTGCAAAGGCAGTCAAAGACATGGGTTCCTCTATCCATAAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACAACACTGAGTGCTGCTTCAAACTTTGAGTACCGTGTCCCTTTTGTGGCGGTTCAGGAGGCTACAAATAATTTCGATGAGAGTTGGGTTATTGGGATAGGTGGTTTCGGAAAAGTGTACAAGGGAGAGTTGAGTGATGGCACTAAAGTGGCAGTTAAGAGGGGGAATCCACGGTCCCAGCAGGGTCTTGCAGAATTCCGAACTGAAATTGAAATGCTGTCTCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGAGCAAATCATAGATCAAACACTTGCAGGCAAAATCAGACCAGATTCTCTGAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGACTATGGTGTGGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCAGTGGTTCAAGGCGACCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCTCAGGTCAACAATTTCAACCAGGATGCAAGTGCTTCGGTTACACAATTTGCAGGCTCAGGCCTCGATGATCTGTCTGGTGTTTCTATGAGTAGGGTGTTCTCACAGTTGGTGAAGTCTGAGGGTAGATAG

Predicted protein sequences of Glyma13g40640

Limit To All Plant Sequences

>Glyma13g40640.1   sequence type=predicted peptide   gene model=Glyma13g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDYWRNIGFFICVLSIFPLVCFCATFVPVDNYLIDCGATASTSVGTRNFIADNNKDLLSTQEDILATTSLKSVTSSSDDLPLYQTARVFTGSSKYTFKIKQKGRHWIRLYFFPSTYEKYNLSAADFTVSTQNHVLFRSLNMQKDPVMKEYSVNVTSDTLVLTFTPSGNSTAFVNAIEVVSVPDDLIVDDGFALDPSVTSSGLVTQALETVWRVNMGGPTLTPINDTLQRTWVPDQSFLLEPNLASNFSNIKGVKYENRGQATENTAPPTVYGTLTQMNSSNDPRSIFNVTWQFDVSPGFQYLVRLHFCDVVSKALNVLIFNAYVDSKLAASSADPSTTSNNALGVPYYRDLVTAVAVSKTLRVGIGPSDLNKDYPNAILNGLEIMKMNNSMGNLIPGAGSVAITSGSSSKKTGMIVGVSVGVVGAVVLAGLFFVLCRKRRRLVQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEQIIDQTLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVTQFAGSGLDDLSGVSMSRVFSQLVKSEGR*

>Glyma13g40640.2   sequence type=predicted peptide   gene model=Glyma13g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKDPVMKEYSVNVTSDTLVLTFTPSGNSTAFVNAIEVVSVPDDLIVDDGFALDPSVTSSGLVTQALETVWRVNMGGPTLTPINDTLQRTWVPDQSFLLEPNLASNFSNIKGVKYENRGQATENTAPPTVYGTLTQMNSSNDPRSIFNVTWQFDVSPGFQYLVRLHFCDVVSKALNVLIFNAYVDSKLAASSADPSTTSNNALGVPYYRDLVTAVAVSKTLRVGIGPSDLNKDYPNAILNGLEIMKMNNSMGNLIPGAGSVAITSGSSSKKTGMIVGVSVGVVGAVVLAGLFFVLCRKRRRLVQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNFEYRVPFVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEQIIDQTLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDASASVTQFAGSGLDDLSGVSMSRVFSQLVKSEGR*

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