Glyma13g40600 - SoyBase

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Report for Sequence Feature Glyma13g40600

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41100926
stop:	41102530
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00704	PFAM	Glycosyl hydrolases family 18	JGI		ISS
UniRef100_I1M4Q7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Q7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HU30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-S globulin n=1 Tax=Medicago truncatula RepID=Q2HU30_MEDTR	SoyBase	E_val: 3.00E-121	ISS

Expression Patterns of Glyma13g40600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40600

Paralog	Evidence	Comments
Glyma15g04820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g330900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40600

Limit To All Plant Sequences

>Glyma13g40600.1   sequence type=CDS   gene model=Glyma13g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCCATATTCCGGCAATACACCTTGGACGACTCATTCTCGCAAGTGTTGGTGTCCCCGAAATTCCTGAAGGAGTACCAAATAGCCCTGACCTTCGCAAGCGACTACGACGACGACGGCGTCCCCACCAACGGGGTTTTCCGGCCAACCTGGGACCTAACCAAGGTGACCCCGGAATCAATCACGCGATTCAAGGATAAGAACCCCGACGTGGACATCAAAGTCTTCATCAGCATCGGCAACCGCGGCACCCAGCACCCCTTCAAACCCCTCAACAACCAAACCTGGATCCAGAACGCCACCATGTCCCTCACCAGCCTCATCAACAACCTCCACGTCGTCCACGGCATCGACGTCCTCTACGACCACATCGATGCCTCCCCCGCTGACTTTACCGAGTGCGTTGGCCAGCTCATTAGGAACCTCAAGGAAAACGGCGTCGTCTCCCAGGCTTCCATTTCTCCCTCGTCTTATCCCAACCAAGAATACTATCCGTTACTCTACAGCTCTGTGCCCTTCTTCGTTGACTGGGTCGATTACCAGTTCCAAAGCGAGGATCAACCTGTCTTGGAACCCACCACCTTGGTGAAGCGCTACAATGAATTAACCAAGGTTTATCCCAAAACAAAACTCTTTGCTGGCTACAGTGCTGAGAATGAGGACTGGGCCACAGTTTCCCCGTTCGTGTTCTTTTTGGGTGCCATGGACCTTCTCAAGAAGAGAAGTGCTCCTGGTGTTTCCATTCATTACCATAATTACTATGCATCAGAAGCTCCCAATAATAAGGACTGA

Predicted protein sequences of Glyma13g40600

Limit To All Plant Sequences

>Glyma13g40600.1   sequence type=predicted peptide   gene model=Glyma13g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSIFRQYTLDDSFSQVLVSPKFLKEYQIALTFASDYDDDGVPTNGVFRPTWDLTKVTPESITRFKDKNPDVDIKVFISIGNRGTQHPFKPLNNQTWIQNATMSLTSLINNLHVVHGIDVLYDHIDASPADFTECVGQLIRNLKENGVVSQASISPSSYPNQEYYPLLYSSVPFFVDWVDYQFQSEDQPVLEPTTLVKRYNELTKVYPKTKLFAGYSAENEDWATVSPFVFFLGAMDLLKKRSAPGVSIHYHNYYASEAPNNKD*

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