Glyma13g40550 - SoyBase

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Report for Sequence Feature Glyma13g40550

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41054752
stop:	41069829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45780	AT	Annotation by Michelle Graham. TAIR10: phototropin 1 \| chr3:16818557-16823960 FORWARD LENGTH=996	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009638	GO-bp	Annotation by Michelle Graham. GO Biological Process: phototropism	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009903	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement	SoyBase	N/A	ISS
GO:0009904	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0010362	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of anion channel activity by blue light	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009898	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: internal side of plasma membrane	SoyBase	N/A	ISS
GO:0009986	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell surface	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009882	GO-mf	Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0610	KOG	Putative serine/threonine protein kinase	JGI		ISS
PTHR24354	Panther	SERINE/THREONINE-PROTEIN KINASE YPK-RELATED	JGI		ISS
PTHR24354:SF88	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00989	PFAM	PAS fold	JGI		ISS
UniRef100_I1M4Q3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4Q3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5DW43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phototropin n=1 Tax=Phaseolus vulgaris RepID=Q5DW43_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40550

Paralog	Evidence	Comments
Glyma15g04850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g330400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40550

Limit To All Plant Sequences

>Glyma13g40550.1   sequence type=CDS   gene model=Glyma13g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAGTCAGAAAAATCGCCCACGAAAATATCACCACTAAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAGCTTTAGCTTCAACTTCAACCAACGCCCGCGTGCGTTCACAGCCTCTTTGGAAATCGTGGACGGAGTCGGAAGAACCGCGCAATGAAATCGCTGCCACGTCGTGGATGGCCATCAATCCGGCGGCCGGAGAAAGCGGCGAGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTCCGGACCGACACCGAGACCGGCAAGCCGCAGGGGGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCTAACGCCGCGAAACTCGCCGCCGCTGCTTCGTCATCCAGGAAGAACTCTCAGAACTCCGCCAGAACTTCCGGCGACTCTTCGGACGGCGGCGGCGGAGGCGGAGGGATTCCGAGAATTTCGGAGGATGTGATGGGAGCTTTGTCGGCTTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAAGCCGATTACCCGATCCTGTATGCGAGTGCTGGGTTCTTTAAAATGACGGGTTATAAGTCCAAGGAAGTTATTGGGAGAAATTGTCGTTTTTTACAGGGTGCGGACACGGATCCCGAAGACGTGGCAAAGATAAGGGAAGCATTGCAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGAAGACGCTACGTCCAAATGGATTGCCCGAATCCTTGATTCGATATGATGCACGGCAGAAAGAGAAGGCTACAAGTTCAGTAACTGAGTTGCTGCAGGCCATGAAGCGCCCCCGAGCATTAAGTGAATCCGCAAGCCGTCCCTCCATCAGAAAATCAGGATCTAGATCTTCAGACGAAGAAAAATTAGAACAAGAACAAGAAGATGACAAAGAGAAAGCACAAAAAACATTAAGAAGAATATCTGAGAGTGGAGCTTCATTTGGACGCAAGTCCGAAGGATCAGGAAATAGAATTTCAATGGAAAGAATCAGTGAACTGCCCGAAAATAAACACAGAAACTCTCAACGACGTTCTTTCATGGGGTTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAGTGAAGTCATTGAGGACGAGAGCTCTGAGAGTGAGGATGATGAGAGGCCTAATAGTTTTGAATTAGATGACAAAGAAAAGCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTCGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAACAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTAATCAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAATTGGTAAAACAAACTGCAGAAAATGTCGATGAGGCAGTGAGAGATCTTCCGGATGCTAATAAGAAACCAGATGATTTATGGACAAATCATTCAAAAACAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAGGCTTAAAGCATTTCAGGCCAATTAAACCATTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCGATGAAAGCTATGGATAAGGGTGTTATGCTCAATCGTAATAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTCCAGACCAAAACACACGTTTGTTTGATTACTGATTATTGTCCTGGGGGAGAACTATTCCTGCTTCTTGATCGGCAGCCGACTAAGGTTCTCAAGGAAGATGCCGTGAGATTTTATGCAGCAGAGGTAGTGATCGTATTGGAGTACCTTCATTGCCAAGGAATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACATCTAGCAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAGAAGAAGAAAAAGAAGAAACAGAAAAGTCAAGAGGTTCCAATGTTTATGGCAGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTCCGGGGGAAAACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCTAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCGGAAACTGAAGAAGAAAAAGAAGCCAAAGATATACATCCTGGGCTAGAGGATCTGCAGACAAATATTTTCTAA

Predicted protein sequences of Glyma13g40550

Limit To All Plant Sequences

>Glyma13g40550.1   sequence type=predicted peptide   gene model=Glyma13g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQSEKSPTKISPLRSSFPRDPRGSLEVFNPNTSALASTSTNARVRSQPLWKSWTESEEPRNEIAATSWMAINPAAGESGEAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNAAKLAAAASSSRKNSQNSARTSGDSSDGGGGGGGIPRISEDVMGALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTDPEDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATSSVTELLQAMKRPRALSESASRPSIRKSGSRSSDEEKLEQEQEDDKEKAQKTLRRISESGASFGRKSEGSGNRISMERISELPENKHRNSQRRSFMGFRRKSQSNDESMDSEVIEDESSESEDDERPNSFELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDLPDANKKPDDLWTNHSKTVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIVLEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLIIPATNSKKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETEEEKEAKDIHPGLEDLQTNIF*

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