Glyma13g40540 - SoyBase

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Report for Sequence Feature Glyma13g40540

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41047891
stop:	41051059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07850	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF604) \| chr1:2426745-2428719 FORWARD LENGTH=541	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG2246	KOG	Galactosyltransferases	JGI		ISS
PTHR10811	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE	JGI		ISS
PTHR10811:SF5	Panther	RADICAL FRINGE	JGI		ISS
PF04646	PFAM	Protein of unknown function, DUF604	JGI		ISS
UniRef100_G7IU85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7IU85_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7JSJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fringe-like protein n=1 Tax=Medicago truncatula RepID=G7JSJ6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40540

Paralog	Evidence	Comments
Glyma15g04860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g330300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40540

Limit To All Plant Sequences

>Glyma13g40540.2   sequence type=CDS   gene model=Glyma13g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTCTTCTTCCCATCAACGCATGCTCCACACAAGCTCCAAAAGCATCATCACTTGGTTGATTCTAATCACCATTGTACTCTACACCCTTTATTCTTCGAACATTATCCTCTTCAACAATGACCAACAAGATTGTTCCATTTCCACCGCCAACTTAAACGAGGCCATCCAAGAAAACCTTCAGGTAAGTAGTACTTACAACAACACATCCTCAAAGACTATAGCCACCGATGATGAAAGTGTTGAAAAGAAAAAATCATTAGTAGAGAAACGACCAAGACCAAGAGAGGATGAAGACGATGAGGACGAAGGAGAAGAAAAAAACAAAGAAGAAGAAGAAAACAAATCTCCCGTGGTAGTTAGATTAACACCCAAGCAAATGTCTGAGAGACAAGACACTGAGCTAAAGCATGTTGTTTTTGGGATAGCTGGTTCATCGAACCTATGGCACATTAGAAAAGAGTACATTAAGATATGGTGGAGGCCTAAGAAAACTAGAGGGGTAGTGTGGTTGGATCAAAAAGTGAGGACTCAAAGCAACGAAGGGTTACCCGATATTCATATCTCGGGGGACACTTCAAAGTTTAGGTATACTAATCGTCAAGGGCAAAGATCCGCGTTAAGGATATCAAGGGTTGTGACAGAGACATTGAAGCTTGGGATGAAAGATGTGAGATGGTTCGTGATGGGGGATGATGACACAGTGTTTATGGTTGATAATGTGGTTAGAATTCTTTCCAAATATGACCATAGACACTTTTATTATATTGGAAGCTCATCCGAAAGCCATGTTCAAAACATTCATTTCTCATATGCCATGGCATATGGTGGAGGAGGATTTGCCATAAGCTACCCTTTGGCCCAGGAACTTGCAAAGATGCAAGATCGTTGCATTCAGCGGTACCCTGCTTTGTATGGTAGTGATGATAGAATTCAAGCTTGCATGGCTGAGCTTGGGGTGCCACTCACTAGAGAACCCGGCTTTCACCAGTATGATGTATATGGAGACCTACTAGGCCTTCTAGGGGCACATCCAGTGTCTCCACTTGTGTCACTTCACCACCTTGATGTAGTGCAACCAATATTCCCAAGGATGACAAGAGTAAGAGCCCTGCGACACCTAATGGAGTCTGTGAATCAGGACTCAGGCAGCATAATGCAACAATCAATATGCTACGACAAACACAGTTTTTGGTCAATATCTGTTTCATGGGGCTACGTAGTTCAAATCTTGAGGGGGGTGTTGTCCCCTAGAGAATTGGAGATGCCATCAAGAACCTTTCTCAATTGGTACAGAAGAGCTGATTACACTGCATATGCATTCAACACAAGACCTGTTGCTAAACACCCTTGTCAGAAGCCCTTTGTTTACTATATGAACAATACTCATTATGACTCCACCACAAAACAAGTTGTTGGTGTTTACTCTCGTGACAAATCCAAATCCCCTTTCTGTCGGTGGAGAATGAATTCACCAGAGAAAATCACCTCTGTTGTAGTTACAAAAAAACCAGATCCATTGCGCTGGAAAAAGTCACCGAGGAGGGATTGTTGTAGACTATTGTCATCACGTAAGAGCGCAAATACTCTATACATTTGGGTGGGTAATTGTCAAGAGGGTGAAGTTACTGAATTATAG

Predicted protein sequences of Glyma13g40540

Limit To All Plant Sequences

>Glyma13g40540.2   sequence type=predicted peptide   gene model=Glyma13g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSSSHQRMLHTSSKSIITWLILITIVLYTLYSSNIILFNNDQQDCSISTANLNEAIQENLQVSSTYNNTSSKTIATDDESVEKKKSLVEKRPRPREDEDDEDEGEEKNKEEEENKSPVVVRLTPKQMSERQDTELKHVVFGIAGSSNLWHIRKEYIKIWWRPKKTRGVVWLDQKVRTQSNEGLPDIHISGDTSKFRYTNRQGQRSALRISRVVTETLKLGMKDVRWFVMGDDDTVFMVDNVVRILSKYDHRHFYYIGSSSESHVQNIHFSYAMAYGGGGFAISYPLAQELAKMQDRCIQRYPALYGSDDRIQACMAELGVPLTREPGFHQYDVYGDLLGLLGAHPVSPLVSLHHLDVVQPIFPRMTRVRALRHLMESVNQDSGSIMQQSICYDKHSFWSISVSWGYVVQILRGVLSPRELEMPSRTFLNWYRRADYTAYAFNTRPVAKHPCQKPFVYYMNNTHYDSTTKQVVGVYSRDKSKSPFCRWRMNSPEKITSVVVTKKPDPLRWKKSPRRDCCRLLSSRKSANTLYIWVGNCQEGEVTEL*

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