Glyma13g40460 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g40460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40965857
stop:	40975049
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60170	AT	Annotation by Michelle Graham. TAIR10: RNA binding (RRM/RBD/RNP motifs) family protein \| chr5:24228178-24232394 FORWARD LENGTH=987	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2068	KOG	MOT2 transcription factor	JGI		ISS
PTHR12603	Panther	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7IU41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCR4-NOT transcription complex subunit n=1 Tax=Medicago truncatula RepID=G7IU41_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M4P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4P3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40460

Paralog	Evidence	Comments
Glyma15g04950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g329600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40460

Limit To All Plant Sequences

>Glyma13g40460.1   sequence type=CDS   gene model=Glyma13g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATCAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGGTGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTAATTCAGCGGAATCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATTTCCTCCAGCAGCGAGAATATTTTGGTCAGTATGGAAAGGTCTTAAAAGTGTCAATGTCTCGGACTACAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCGAAGGAAGAAGAAGCAATTCGATGCATTCAAAATGTGCATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTTCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCATGTTCAACAAATTACTGGTGCTGCAAACAATATACAACGACAAGCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCATGGATAATTCATCAGGAAAACCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAAGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCGGTTGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGATGGTTTATTATGTCCAAATGGACTGTCCAGGCCTAAACCTGATACAATCAGCAGCAGCCTACCCTTTTCCTCTGCTGTTGCATGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGGCCACTGTTGAGTGATGGGAGTCGTAGTATGACACCTCAAATAAAAAATGAATTATTGAAACCTGTTGAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGGTGAAAGAACTTTGGTTTCTGATGTTTCTCTTTCAGCTGTTAAATTGAACAACCAGTTGTCTTCTCTACCATTAGCCGGAGATAGTGGTAGAGGCAGCTTTACTGCAACTAACACAACTAGTTCAATTGACATCACTCGACAACCATTAAGCTTTGGTCCTGAGGAAGCAGTTATATCTACCTGTGAAGAGATTGAGAATTTGTCCTGCGAGTTTTCTTCTGTTTACATTGATAGAAATGCCCAAAATAAACACTACAGCCTATCCATACCTAGCAGCTCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATTGCAGTATAATACTGACAAATTGAAAGATTTAATGATTAAAAATGCAGACAGTAAAGCTGCTGCATTATATAATGAGGTTTGTAATTTAAAGGAACAGTGTGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCTAATACTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTATTGGTTCTTATTTGCCCGAGTCAGCCAGTTTCCTTCATGTCTCAAATCATTCTAGTCCTCTTCTTCTGCAGCGTGGTGACCCATGTAATGTTGTAAATGCTGGTTTTTTAGATGCCAATGATAAAGTTGAGGATAACTCACTATTACATGCACATAACATATGCAATGGATATTCTGATGAGATCAGTACCAGTTCTTATTGGTTCCGCCATGATGCAAGCAATGAGCACCACATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATATTATCGATGGAGTTTGATGCCTGGGATGACTCGCTGGCATCACATGAGAGTTTGACCAAGTTGTTGGGTGACAACACTGACAGCCAGAATGGTCCGTTAAAAAAATCTAGTTCTAGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCATGGCAGGAGGAATCCAAATTCCAAGCCAATGTACCTCCATCTTCTGGTGCTACCCAGCCATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGAACAAGCTGGGTTTTGCAAATGGCTTCCCCTCCAATAACCTCAAGGAATCTGGAAATCTTGGCAGTGGTCATTTCATTGCTTCAAACAATAAGCTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCGCCAGGATTCTCTGTTCCGAACAGGGCACCACCTCCTGGTTTCTCTTCAGTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTGGACCCTTCTTTCTTACTGAGAAATTCTTATCAAACACCCTCAAATGGAAATATTGGTGGTCCAGGTGACGTTGAATTTATGGATCCTGCTATTTTGGCAGTTAGTAAAGGCCCTGAACAGTTTAACTACTTTGAAAATGAGGCCAGAGTTCAATTATTGATGCAAAGATCTCCCTCACCACAGCAAGACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTATCTCTGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGCCAATTGGATGGGCGGAATGGAAATGGTCTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGATTCAAAATATCGGATGCCTAATTCTATGGATGTGTTCAACAGGACATTTGGGATTTGA

Predicted protein sequences of Glyma13g40460

Limit To All Plant Sequences

>Glyma13g40460.1   sequence type=predicted peptide   gene model=Glyma13g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKVKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSHVQQITGAANNIQRQAGNVLPPPLDDCMDNSSGKPIVKNSSSTSVSIVRSSPPNGTSGRPIALSAVAWGTRATNCQPAADGLLCPNGLSRPKPDTISSSLPFSSAVACTIQASLNSDVTKRPLLSDGSRSMTPQIKNELLKPVEQNRSMDILDSAGERTLVSDVSLSAVKLNNQLSSLPLAGDSGRGSFTATNTTSSIDITRQPLSFGPEEAVISTCEEIENLSCEFSSVYIDRNAQNKHYSLSIPSSSPDNVLVKSMQSQELQYNTDKLKDLMIKNADSKAAALYNEVCNLKEQCDLSLDSQSQVVSANTEVEDDVTTFDNQRLKDPEVIGSYLPESASFLHVSNHSSPLLLQRGDPCNVVNAGFLDANDKVEDNSLLHAHNICNGYSDEISTSSYWFRHDASNEHHIGRLVSDAVNIGSDAVMDKGESSIISNILSMEFDAWDDSLASHESLTKLLGDNTDSQNGPLKKSSSRKVQSNNQSRFSFAWQEESKFQANVPPSSGATQPFPKNGSLIQDFVERDFSLNKLGFANGFPSNNLKESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSVERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGGPGDVEFMDPAILAVSKGPEQFNYFENEARVQLLMQRSPSPQQDLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGRNGNGLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDVFNRTFGI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain