SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45240 | AT | Annotation by Michelle Graham. TAIR10: geminivirus rep interacting kinase 1 | chr3:16570774-16572902 REVERSE LENGTH=396 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24347 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24347:SF40 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7IRQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium/calmodulin-dependent protein kinase kinase n=1 Tax=Medicago truncatula RepID=G7IRQ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4L5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4L5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g40190 not represented in the dataset |
Glyma13g40190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g29640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g326900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40190.4 sequence type=transcript gene model=Glyma13g40190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTGTTACCGTTGTTGGATTCCTCCTAAAAATAAAATTTGAACAAAAATTTTAATTGCTATTCTGCCCCTCTTTTTAGCTTCGATGTATTTAATCATTTTTTGGCTCACTCTCTTTCTTCCCGATCGATCGATTTCTTCCGCCTAGGGTTTTTCTGCATTCCGATTACCCATCCCACCGCATTCACAATCACAATTGCAATAGGGTTTTCGTTTCCTTCGGCTTGCTTCTGTGGTAATTGCAGCTTTCTCGATTGAATTTTGGATTTAGGGTTCCGATTCCGAGTCTTACTTCTAAAAGCCGTCGATTCGTCCTGGAATTTCAGGCTCTCGGAGCCGCAGAGATAGGGTTCTTCCATTTTGTCATGTTCCCCAAGGAAAAAGAGAGAGAGAGGGGTCAACGAATTTTTTGGTGGTGAGTTGTGGGCTGAGCCTGCAACCGTTGTTATAAACTGGAGTTATCGCAATGTTGGGTGTGAATCGTACTGGCTTTAATTTCTGTAGCCGTTTAATCCACCTAGCTGAATGGCATCCATTAGAATAGCAATGCTAAACAGGGCTTGAGGCCCTTCCGTTCCTCTCGTATCAGGGTCAGCAGAGAGAAGAGAAGTTAGTTATTAGGATATATATTGGCTTTGGCCGTTTGAGGGTGAGTCAGATTGATGCTGTGATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTCCAAAAACCAAGACGACGGCGTCGGGATAAACGTGGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGCGATGAGACATATAGTGGTGACGTTACTAGTAACTGCACCAGTGTAGATGACAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTAAACTTTAGAGCTAAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGGATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTACGCAATTAAGTCCTTTCACAAGTCTCAATTACAAAAGCTTCGAGTTGCACCGTCTGAGACTGCTATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCATGGCACTGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGATGAACTCCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAACCCCCAGTTGAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTGAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGAAGATGGGCCTATTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCATGGTGACTGAAGACTCTGATGGGAGCGATATACTTGCTTGATCCACGCTGATTCTAAGTTGGATTTCTTATGTACAGTGACAAGGCCCATTAATTTTTCCCCCACTTTGGCCCCACGGAGAGATGTTATGATTATTATAGAGGGAGTCTCCAAAGAATAATTGGGAATTAAGAAAATACAGTTCATGTTACCGACGATATGTAGTCAACTAAGTCATGTTTATTTTTGTGTTGTGAAGCATTTGGTGTCCTCTACGGACTTAGAGGTCTTGTAATACGGCTCTTTCGCATAGAACGAGTTTTTTTCTTTCTTTCTCAAACACGTGCCGAATTCTGTTCAGTTCATACTCTTTATACATTCCTTGGAGTGTTTTGTTTTTACATTTGCTTTGGTTTAACATTCAAAGAATTTGATTATTCAACAA
>Glyma13g40190.3 sequence type=CDS gene model=Glyma13g40190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTCCAAAAACCAAGACGACGGCGTCGGGATAAACGTGGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGCGATGAGACATATAGTGGTGACGTTACTAGTAACTGCACCAGTGTAGATGACAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTAAACTTTAGAGCTAAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGGATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTACGCAATTAAGTCCTTTCACAAGTCTCAATTACAAAAGCTTCGAGTTGCACCGTCTGAGACTGCTATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCATGGCACTGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGATGAACTCCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAACCCCCAGTTGAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTGAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGAAGATGGGCCTATTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCATGGTGACTGAAGACTCTGATGGGAGCGATATACTTGCTTGA >Glyma13g40190.4 sequence type=CDS gene model=Glyma13g40190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTCCAAAAACCAAGACGACGGCGTCGGGATAAACGTGGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGCGATGAGACATATAGTGGTGACGTTACTAGTAACTGCACCAGTGTAGATGACAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTAAACTTTAGAGCTAAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGGATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTACGCAATTAAGTCCTTTCACAAGTCTCAATTACAAAAGCTTCGAGTTGCACCGTCTGAGACTGCTATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGCGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCATCATGGCACTGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGATGAACTCCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAACCCCCAGTTGAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTGAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGAAGATGGGCCTATTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCATGGTGACTGAAGACTCTGATGGGAGCGATATACTTGCTTGA
>Glyma13g40190.3 sequence type=predicted peptide gene model=Glyma13g40190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDYKSFSFSKMMGCCGCFGFVQKPRRRRRDKRGISNLLSQGLLLDGETEGDETYSGDVTSNCTSVDDNEVQAVRNRSEDILNFRAKNGMVCRPFPVKETCKLDRSEDENGNKMINGYVREYKIGSGSYGKVALYRSSVDGKHYAIKSFHKSQLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITHHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGEDGPIPGYLCWCKRKSMVTEDSDGSDILA* >Glyma13g40190.4 sequence type=predicted peptide gene model=Glyma13g40190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDYKSFSFSKMMGCCGCFGFVQKPRRRRRDKRGISNLLSQGLLLDGETEGDETYSGDVTSNCTSVDDNEVQAVRNRSEDILNFRAKNGMVCRPFPVKETCKLDRSEDENGNKMINGYVREYKIGSGSYGKVALYRSSVDGKHYAIKSFHKSQLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITHHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGEDGPIPGYLCWCKRKSMVTEDSDGSDILA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
