Glyma13g40150 - SoyBase

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Report for Sequence Feature Glyma13g40150

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40701213
stop:	40705872
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60580	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:24354298-24356706 FORWARD LENGTH=487	SoyBase	E_val: 6.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1609	KOG	Protein involved in mRNA turnover and stability	JGI		ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PTHR23012:SF37	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7IRR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein n=1 Tax=Medicago truncatula RepID=G7IRR0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M4L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4L2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g40150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40150

Paralog	Evidence	Comments
Glyma12g29600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g326500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g40150

Limit To All Plant Sequences

>Glyma13g40150.1   sequence type=CDS   gene model=Glyma13g40150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTCATCAAAAAGAAAAACATAACGCACCTTCGTCCAAACCAACGGTTTCTCATCCACTTCACAAGGTGGATGATCCAATGGGGGTGACCGATGAAAACGAAACCTTGCGTGTTAGTAATCAATGGAAGCGACAGAATCTTCTTCAGCTGGAAATACCGGCCAGAACATCGGAAGAGTCTTCTTCTCAGGATTTTGTTGGAATAAGGATGCCATTGACGCCAAGTCCAACTCCAAGTCAGAAAAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAAAGCCTCCTTCTTCATCATCCAGAGCCAAACCATCCATGAGAAACATCTTACCAAAATTCGGCTTCAGGAACCGTGCACCATCGATATCGCTTGATGTTGAAAAGGGTGTTACTACTGCTGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGTCTTCAATCCCAAGATCAGTGTCTCTCACGAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCATTACCGGTTGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTGTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACTCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAACACCAAAGAAAAAGGCATAAGGAGACTGGATTCGGTTTTCCGTATTATTCCTTCCACTCCTCGCGTAATTGAAGTGAATGAAACAAGAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCTGTGTGTAGAATTTGTTTGGTTGATCTATGTGAAGGAGGCGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACTTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTAAGGATCCGAAGTGTTCGAGCTCAGAATACTAGAGCAAGGTCCGAACAGGGAGATGACTTCAGGGCTTGGCAGGAACTTCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGTACTGGGTCTACTCTCCTCCGTAACATCATCGACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAGGCACAACAGCGTGGTTCTTCAGCGATGACACAAGAAGGACTATGA

Predicted protein sequences of Glyma13g40150

Limit To All Plant Sequences

>Glyma13g40150.1   sequence type=predicted peptide   gene model=Glyma13g40150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAHQKEKHNAPSSKPTVSHPLHKVDDPMGVTDENETLRVSNQWKRQNLLQLEIPARTSEESSSQDFVGIRMPLTPSPTPSQKRVNFLVTSRSVDAPKPPSSSSRAKPSMRNILPKFGFRNRAPSISLDVEKGVTTAAQEGSFSGHQEKSSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRLDSVFRIIPSTPRVIEVNETRKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVRAQNTRARSEQGDDFRAWQELPVLVIVSMLAYFCFLEQLLVGRMRTKAIFISLPFACVLGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQAQQRGSSAMTQEGL*

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