Glyma13g40100 - SoyBase

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Report for Sequence Feature Glyma13g40100

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40664580
stop:	40666375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g40100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37170	AT	Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 2 \| chr2:15613624-15614791 REVERSE LENGTH=285	SoyBase	E_val: 1.00E-112	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF27	Panther	GLYCEROL UPTAKE FACILITATOR	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_I1M4K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4K4_SOYBN	SoyBase	E_val: 2.00E-149	ISS
UniRef100_Q2TFP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PIP2,2 n=1 Tax=Glycine max RepID=Q2TFP3_SOYBN	SoyBase	E_val: 4.00E-146	ISS

Expression Patterns of Glyma13g40100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g40100

Paralog	Evidence	Comments
Glyma12g29510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g40100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g325900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g40100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g40100

Limit To All Plant Sequences

>Glyma13g40100.4   sequence type=transcript   gene model=Glyma13g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCCACTCATTACAGCACTCTTCCTTAAATACCATCATCTTTCTTCACACCACACACCACACACCACACACATAGTAGCTATTATACTCTCTAGAGTAATTGCGGAATCTGCTAGAATTTTCTAATAATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAATTAAAAAAAAAAAAAAATCAAGTTTCTCCACTACCTAAATTATGATGATTTTGGTCCTGTGTCACCCAAAACAAGAACAGTGTTTCAGTTCAAGTCTGTCTACAGGTCCCTCTCTTTTGGCTTTTCTGCTTACCCGTGGGTTTGGGGGAAAAGCCAAATACCGTGGGCTCTTGAATTTGTAGATAAGAATGCTTTTATGTCAAGGGTGTATTTGTATCCCTTTTGTTTTTAATTTCTTTTTTCTTCCAAGTATTTATCATCATGTGTTCACTTTTATATAATGTGGAGGATCATTAGCCAAGTTTTCTTTTTGCCTGTTTCATTCGTAAGTGGTGTATCTTCATCATCATCATGCTTCCGCACAAAAATTTATCACTCTTTACCTCTGTTCCGAATGCCTTAACAATTATCATCAATCTTGACTTTAGTAATTGAACTTTTCCGC

Coding sequences of Glyma13g40100

Limit To All Plant Sequences

>Glyma13g40100.2   sequence type=CDS   gene model=Glyma13g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTAAGCATACCTTAA

>Glyma13g40100.4   sequence type=CDS   gene model=Glyma13g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA

Predicted protein sequences of Glyma13g40100

Limit To All Plant Sequences

>Glyma13g40100.2   sequence type=predicted peptide   gene model=Glyma13g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVSIP*

>Glyma13g40100.4   sequence type=predicted peptide   gene model=Glyma13g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA*

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