SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37170 | AT | Annotation by Michelle Graham. TAIR10: plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285 | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF27 | Panther | GLYCEROL UPTAKE FACILITATOR | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_I1M4K4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4K4_SOYBN | SoyBase | E_val: 2.00E-149 | ISS |
| UniRef100_Q2TFP3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PIP2,2 n=1 Tax=Glycine max RepID=Q2TFP3_SOYBN | SoyBase | E_val: 4.00E-146 | ISS |
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Glyma13g40100 not represented in the dataset |
Glyma13g40100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g29510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g325900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40100.4 sequence type=transcript gene model=Glyma13g40100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCCACTCATTACAGCACTCTTCCTTAAATACCATCATCTTTCTTCACACCACACACCACACACCACACACATAGTAGCTATTATACTCTCTAGAGTAATTGCGGAATCTGCTAGAATTTTCTAATAATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAATTAAAAAAAAAAAAAAATCAAGTTTCTCCACTACCTAAATTATGATGATTTTGGTCCTGTGTCACCCAAAACAAGAACAGTGTTTCAGTTCAAGTCTGTCTACAGGTCCCTCTCTTTTGGCTTTTCTGCTTACCCGTGGGTTTGGGGGAAAAGCCAAATACCGTGGGCTCTTGAATTTGTAGATAAGAATGCTTTTATGTCAAGGGTGTATTTGTATCCCTTTTGTTTTTAATTTCTTTTTTCTTCCAAGTATTTATCATCATGTGTTCACTTTTATATAATGTGGAGGATCATTAGCCAAGTTTTCTTTTTGCCTGTTTCATTCGTAAGTGGTGTATCTTCATCATCATCATGCTTCCGCACAAAAATTTATCACTCTTTACCTCTGTTCCGAATGCCTTAACAATTATCATCAATCTTGACTTTAGTAATTGAACTTTTCCGC
>Glyma13g40100.2 sequence type=CDS gene model=Glyma13g40100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTAAGCATACCTTAA >Glyma13g40100.4 sequence type=CDS gene model=Glyma13g40100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA
>Glyma13g40100.2 sequence type=predicted peptide gene model=Glyma13g40100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVSIP* >Glyma13g40100.4 sequence type=predicted peptide gene model=Glyma13g40100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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