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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28390 | AT | Annotation by Michelle Graham. TAIR10: SAND family protein | chr2:12139836-12143375 REVERSE LENGTH=607 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006882 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis | SoyBase | N/A | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG0997 | KOG | Uncharacterized conserved protein Sand | JGI | ISS | |
| PTHR13027 | Panther | SAND PROTEIN-RELATED | JGI | ISS | |
| PTHR13027:SF7 | Panther | gb def: agcp8648 [anopheles gambiae str. pest] | JGI | ISS | |
| PF03164 | PFAM | Trafficking protein Mon1 | JGI | ISS | |
| UniRef100_G5DWC6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAND family protein (Fragment) n=1 Tax=Silene latifolia RepID=G5DWC6_SILLA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTH7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g40080 not represented in the dataset |
Glyma13g40080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g29450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g325700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40080.4 sequence type=transcript gene model=Glyma13g40080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTGGAGGTGCATGAAGCAGTTACCCAGATGTAGGAGTGGCTAATTGCAGGCTTGGGCCTTGGGGAACATGTTAGGCCGCCGGCCCACAGATGGCAGTGCGTGGCGGGATGCACCCTGGACGCATGTACTCAGACTCGACTCCGCCAAAGCAAGCAAAGCACCAGCGTCCAGCGACTCAAATCTCTCTCTCTCTCTCTTCATTATCTTCACAATCGAAGAATTGCAGTGAGTGAGATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTGTGATTCTTGTTTTGTAGTTATAATACATCCAAGAGATTGATTTGTGATATTCTGAGTATGTAGTTATGACCTGAATTGCCTGATGCATTTATTTATGTTGAATCTATGAATTACGGTTTTCTTCTTATGGGGAAAAAGTGGAGGTGGTAATAGTCCTTTTTTGCAGTTTTAGTCCTGGATCTGGATGTTTCAGAAGGAATGATTCTATCAATAAGCAAACCCCTTATTTTCTGTGAGATGCATTTAGAGATTCATACCAATAATAGACAAGCCAATCTATACATGTGGGATATAGTTGCACTATTATATTTTGGATGCTTTGATGAACTCTGATCAGACTTGTAATAATTTTATTTGGCAGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACGTGCAATCGGGTGTGTCAGTGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTGGGAGCTAGCCCCTTTTCATGGTGATTTTCAATCAATTACTGTAAACATGCGAGAGTGTTTATTTAATAAAATTTCTATAGAATTTAATCTTTCCTGTTTTTTTTCCTCGTTATGTTCTATTAAGAAAGTATCTGATGGAAAATCTTTGTATTAGTGTTTACAGCAGAACTGCAGTTTGCTTGTAACTATTCAAATACTATTAGTGCTGTAGTTTATAGGTCATGTTTGGATAAATTTATCCATACGTAACTTATAGGAGAAGAAAATAAGAAAGCCAAATAATACTTCTTGGATAAGTTAAAATAAACTTGATACACTTGATTTTTTAGAAGTTTTTTTTCATTTAACTTCTATAAAAGTTAGAGTGCATAAGTTGTTAATTTCAATATATTTTACTTTCTTATTTTCTTCTCTTATAAATATTTATGAAGTTTATCCAAACAAGGCCATAGACTGGTTGGTTGGTGTGGTGGCTCCAGTGGGCTATTTTTGAGGGATGATGTTTCATCTAAAGCTCATTATGTTAAAAAAATTATATCTGATTCCATTGATAGATGAGAGAGCTTGGAGGGACGATACATACATTCATCTTTGCTTGGTTTTGTGTCTAAATATCGATTGAAGATTTGAGTGTAAATGCGGTTGAGGCCCCATGCTTAGCTTCTCATTCACAGAGGTGTAGGCATTAGGTTTGGTTCTAGTTCTGGTTTGGGCCGAATTTGAGCTGCAATCTGGGAAGTGGGGATGGAATGTGAATTTGAAGAAAGTGACAGAGTCTAGCATAACATTTACTCTCCATGAAATAATAATGTTTACTCCAATTCATAGAGGCCACGAAATTGGGAATGGTTATAG
>Glyma13g40080.3 sequence type=CDS gene model=Glyma13g40080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACGTGCAATCGGGTGTGTCAGTGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTGGGAGCTAGCCCCTTTTCATGGTGA >Glyma13g40080.4 sequence type=CDS gene model=Glyma13g40080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTGTGATTCTTGTTTTGTAGTTATAATACATCCAAGAGATTGA
>Glyma13g40080.3 sequence type=predicted peptide gene model=Glyma13g40080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSADHDSDPPIRLDLPPLSPSLFDSEPSSELQQQSNGSAARPSSYPSSPTSSGYAAERGSSSTASSISQVDDVLHHEIQEITIHDSQPQPPSHSSWLPGKRHADEDDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNGLAFLYAYIHFFDDDTYLMLLTTSSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMHVEDVPPLPSSGSSPHLSQHRLPSDSPEREPNCHIGGVAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGASPFSW* >Glyma13g40080.4 sequence type=predicted peptide gene model=Glyma13g40080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSADHDSDPPIRLDLPPLSPSLFDSEPSSELQQQSNGSAARPSSYPSSPTSSGYAAERGSSSTASSISQVDDVLHHEIQEITIHDSQPQPPSHSSWLPGKRHADEDDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNGLAFLYAYIHFFDDDTYLMLLTTSSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMHVEDVPPLPSSGSSPHLSQHRLPSDSPEREPNCHIGGVAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYGNKYCDSCFVVIIHPRD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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