SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28350 | AT | Annotation by Michelle Graham. TAIR10: auxin response factor 10 | chr2:12114331-12116665 FORWARD LENGTH=693 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0009725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009743 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus | SoyBase | N/A | ISS |
| GO:0010154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit development | SoyBase | N/A | ISS |
| GO:0031540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048442 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal development | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048829 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root cap development | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0035198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: miRNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PF02309 | PFAM | AUX/IAA family | JGI | ISS | |
| PF02362 | PFAM | B3 DNA binding domain | JGI | ISS | |
| PF06507 | PFAM | Auxin response factor | JGI | ISS | |
| UniRef100_G7IRU1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor n=1 Tax=Medicago truncatula RepID=G7IRU1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4J8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4J8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g40030 not represented in the dataset |
Glyma13g40030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g29720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g325200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g40030.1 sequence type=CDS gene model=Glyma13g40030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAAACAGACAAGAGTTTGGATCCGCAGCTGTGGCACGCGTGCGCCGGCGGTATGGTTCAGATGCCGCCGGTGAACTCCAAAGTGTTTTATTTCCCGCAGGGACACGCGGAACATGCGCAGTCCAACGTCGATTTCGGAGCGGCGAGGATTCCGATTCCGCCGCTCATTCTGTGCCGCGTGGCAGCCGTGAAATTCCTGGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGCTGCGGCTGGTTCCTCTCAGAAACTCGGAGCTCGACTACGAAGACAGCGACGCTAACGGCGAGGCGGAGGGTTCGGAGAAGCCGGCGTCGTTCGCGAAGACGTTAACCCAGTCAGACGCGAACAACGGCGGCGGATTCTCCGTTCCGCGATACTGCGCGGAGACGATATTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAGGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACTACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCGGGGGATTCCATCGTGTTTCTGCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGAGTTGGTGGGCCAGAGGGGCCGTGCGGGTGGAGCAGTTATGGTTCTGGAGGGCTTGGGCTTGGGCCATACGGGGCCTTTTCGGGTTTTATGAGGGAGGAGAGTGGGAGGGCGAAGGTGAGTGGTGAATCAGTGAGAGAAGCAGTTACTTTGGCGGCTAGTAACCAAGCGTTTGAGGTGGTTTATTATCCTCGAGCGAATACTCCTGAGTTTTGTATTAGGACCTCGGCTGTGAGAGGGGCTATGAGGATTCAGTGGTGTTCCGGTATGAGGTTCAAGATGCCTTTTGAGACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCAGCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTCCCCCTTGACGTTCAGTTTCCGATACCATCGTTTTCAGGCAACCCCTTTGGGTCTTCTAGCTCTAGCAGCCCCTTTTGTTGTCTCTCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATTCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCAACTAAAGTCCACCAGCTTAATTTGCACGCCGGGATTTCTAATGCTAAGAGTAAAGAAAGTCTATCATCCTTGCTCTCCATGGGAAATTCTAACATGACTTTGGAGAAATCTGATCATGTCAAGAGACACCATTTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTAGATCTTCTAGTGATGTCGCCACGGATGATGAGAATAAGGAAAAGAAGAAGAAGGGATTTCTTAGTGACTCCCAGTCTTCAGTTTCACCAGGAAATTTATCTTCTACTGCCGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAGTCTGAAGATGTAGGACGGACACTTGACTTGTCCTGCCTTTCTTCTTATCAAGAGTTGTACATGAGACTCGCTAACATGTTTGGAATAGAGAGGTCTGATATGTTGAGTCATGTTCTCTACTGCGACTCATCCGGTGCTCTTAAGCAAATTGGAGAGGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACCATTCTGACGGATTCAAACAACAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGAAATGCTGAACATGGATTGGATGCTGCATCAAATAAGACAGGTCCTCTCAGTATATTTGCTTAA
>Glyma13g40030.1 sequence type=predicted peptide gene model=Glyma13g40030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKETDKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGAARIPIPPLILCRVAAVKFLADPETDEVFARLRLVPLRNSELDYEDSDANGEAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIARDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEGPCGWSSYGSGGLGLGPYGAFSGFMREESGRAKVSGESVREAVTLAASNQAFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVSWDEPDLLHNVKRVSPWLVELVSNVPIIHLAAFSPPRKKLRFPLDVQFPIPSFSGNPFGSSSSSSPFCCLSDNAPAGIQGARHSQIGISLSDLHLNNKLQLGLLPTKVHQLNLHAGISNAKSKESLSSLLSMGNSNMTLEKSDHVKRHHFLLFGQPILTEQQISRSSSDVATDDENKEKKKKGFLSDSQSSVSPGNLSSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLSSYQELYMRLANMFGIERSDMLSHVLYCDSSGALKQIGEEPFSEFMKTAKRLTILTDSNNKDSRRVWITGTRNAEHGLDAASNKTGPLSIFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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