Glyma13g39650 - SoyBase

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Report for Sequence Feature Glyma13g39650

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40197573
stop:	40199232
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g39650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28160	AT	Annotation by Michelle Graham. TAIR10: FER-like regulator of iron uptake \| chr2:12004713-12005908 FORWARD LENGTH=318	SoyBase	E_val: 1.00E-102	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0010039	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to iron ion	SoyBase	N/A	ISS
GO:0034756	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of iron ion transport	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR11514	Panther	MYC	JGI		ISS
PTHR11514:SF7	Panther	B-MYC PROTO-ONCOGENE	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7JN98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BHLH transcription factor n=1 Tax=Medicago truncatula RepID=G7JN98_MEDTR	SoyBase	E_val: 1.00E-128	ISS
UniRef100_I1M4G4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4G4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g39650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g39650

Paralog	Evidence	Comments
Glyma12g30240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g39650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g322100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g39650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g39650

Limit To All Plant Sequences

>Glyma13g39650.2   sequence type=transcript   gene model=Glyma13g39650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAGACCTCTAACTATCCAAATACCAACTACGAACACGATGGATGTTCACGAAGACACACTCAAGTACATGAATGATTTTGAGCTGTACGACTTTGTTGCTGATTCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGATCATTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCAGCAGCCCCTTTCATCTCCTGCAAACCCTTTTGATCAGAACAACAACAATAATAATAATGATGCTGTGAATGTCTATGATCCAAGCTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGGAGAAGAAGAAAATGATGGAGAGCATTCTTCTGGGACAACGACAACGACAACGAAGAATGCTGATGGCAAACTGAAACTAAAAACTGATAGGTCAAAAACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTCCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCATGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCAGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTGATGGCCCGTAATATTAGTCATCCAAACTGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTTAGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGGTGAGAGTTTTCTACTTACATTTACGTTGAATGTAAGCTGTCCTCTCTCTTTTCCAATTCAATCTTTTTATACTGTTGAAATGAGTTATTATGATTTTTGCTTATGGATTTAGTCATATTGATGTATTGAAAACAGGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGACTCACTGCACCAAGTATGACGTAGAAGCAATTGCATTTTAGAGAATATGATGAGCCATGAAATATTACGTATAATATCCACGTCAACATCTTGAGCTAGTATGATATCACTTAGTATTACCGCAACACCGTTGCTACCTTCGTTCTGTGTAATTCTCCAGTTTTCAGAACAAATAATAACACTACAAAGACTAGCAAAATATATATGAAACCACAAACAG

Coding sequences of Glyma13g39650

Limit To All Plant Sequences

>Glyma13g39650.1   sequence type=CDS   gene model=Glyma13g39650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTCACGAAGACACACTCAAGTACATGAATGATTTTGAGCTGTACGACTTTGTTGCTGATTCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGATCATTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCAGCAGCCCCTTTCATCTCCTGCAAACCCTTTTGATCAGAACAACAACAATAATAATAATGATGCTGTGAATGTCTATGATCCAAGCTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGGAGAAGAAGAAAATGATGGAGAGCATTCTTCTGGGACAACGACAACGACAACGAAGAATGCTGATGGCAAACTGAAACTAAAAACTGATAGGTCAAAAACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTCCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCATGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCAGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTGATGGCCCGTAATATTAGTCATCCAAACTGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTTAGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGGTGAGAGTTTTCTACTTACATTTACGTTGAATGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA

>Glyma13g39650.2   sequence type=CDS   gene model=Glyma13g39650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTCACGAAGACACACTCAAGTACATGAATGATTTTGAGCTGTACGACTTTGTTGCTGATTCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGATCATTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCAGCAGCCCCTTTCATCTCCTGCAAACCCTTTTGATCAGAACAACAACAATAATAATAATGATGCTGTGAATGTCTATGATCCAAGCTCCACATTCAGTTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGGAGAAGAAGAAAATGATGGAGAGCATTCTTCTGGGACAACGACAACGACAACGAAGAATGCTGATGGCAAACTGAAACTAAAAACTGATAGGTCAAAAACTCTCATTTCTGAAAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTCCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTGTCATACGTGCATGACCTTCAAGCTCAAGCTAGGAAGCTGAAGGCAGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTGATGGCCCGTAATATTAGTCATCCAAACTGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTTAGCAAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCTTCACTGTACAGGGCTCTCGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGGTGAGAGTTTTCTACTTACATTTACGTTGAATGTAAGCTGTCCTCTCTCTTTTCCAATTCAATCTTTTTATACTGTTGAAATGAGTTATTATGATTTTTGCTTATGGATTTAG

Predicted protein sequences of Glyma13g39650

Limit To All Plant Sequences

>Glyma13g39650.1   sequence type=predicted peptide   gene model=Glyma13g39650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVHEDTLKYMNDFELYDFVADSNFDQFINLIRGENEDANCDHFGSDLINDCFVNNQQQPLSSPANPFDQNNNNNNNDAVNVYDPSSTFSSFSCFDGELKGEGEEENDGEHSSGTTTTTTKNADGKLKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQVMARNISHPNCKKIMQVDMFQVEERGYLAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVGESFLLTFTLNVKGTEQEINLPNLKLWVTGALLNQGFEFVASFPA*

>Glyma13g39650.2   sequence type=predicted peptide   gene model=Glyma13g39650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVHEDTLKYMNDFELYDFVADSNFDQFINLIRGENEDANCDHFGSDLINDCFVNNQQQPLSSPANPFDQNNNNNNNDAVNVYDPSSTFSSFSCFDGELKGEGEEENDGEHSSGTTTTTTKNADGKLKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQVMARNISHPNCKKIMQVDMFQVEERGYLAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVGESFLLTFTLNVSCPLSFPIQSFYTVEMSYYDFCLWI*

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