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Report for Sequence Feature Glyma13g39590

Feature Type:gene_model
Chromosome:Gm13
Start:40152115
stop:40152867
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59910AT Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150 SoyBaseE_val: 3.00E-71ISS
GO:0006334GO-bp Annotation by Michelle Graham. GO Biological Process: nucleosome assembly SoyBaseN/AISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0000786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG1744 KOG Histone H2B JGI ISS
PTHR23428Panther HISTONE H2B JGI ISS
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI ISS
UniRef100_I1M4F9UniRef Annotation by Michelle Graham. Best UniRef hit: Histone H2B n=1 Tax=Glycine max RepID=I1M4F9_SOYBN SoyBaseE_val: 7.00E-87ISS
UniRef100_I1M4F9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone H2B n=1 Tax=Glycine max RepID=I1M4F9_SOYBN SoyBaseE_val: 7.00E-87ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g39590 not represented in the dataset

Glyma13g39590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g30300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g321600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g39590.2   sequence type=CDS   gene model=Glyma13g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAACCTTTATATACAACACACACTCTAACCGTATTAGATCACAACACAAGTATTCAAAATATCTCTATATATTCCCTCCATTTCTGAGAATGGCGAAGGCTGCGGAGAAGAAGCCAGCGGCTGAGAAGTCTCCGGCGGAGAAGAAGCCTAAGGCAGAGAAAAAGATTCCGAAGGAAGGCGGTGGCGAGAAGAAGAAGAAGAGGTCGAAGAAGAGCGTGGAGACCTACAAGATCTATATCTTCAAGGTGCTGAAGCAGGTACACCCTGACATCGGTATTTCTAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAAGCGGCGCGTCTCGCCAGGTACAACAAGAAGCCTACTATTACCTCCAGGGAGATTCAGACCGCGGTCAGGTTGGTGCTGCCCGGGGAGCTTGCCAAGCACGCCGTTTCTGAAGGAACCAAAGCCGTTACCAAGTTCACTAGCTCTTAG

>Glyma13g39590.2   sequence type=predicted peptide   gene model=Glyma13g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTFIYNTHSNRIRSQHKYSKYLYIFPPFLRMAKAAEKKPAAEKSPAEKKPKAEKKIPKEGGGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*







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