Glyma13g39470 - SoyBase

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Report for Sequence Feature Glyma13g39470

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40075986
stop:	40080480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g39470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27680	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr2:11803981-11805965 REVERSE LENGTH=384	SoyBase	E_val: 0	ISS
GO:0000096	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006733	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process	SoyBase	N/A	ISS
GO:0006766	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009072	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process	SoyBase	N/A	ISS
GO:0009106	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process	SoyBase	N/A	ISS
GO:0009108	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process	SoyBase	N/A	ISS
GO:0009117	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019748	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary metabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0044272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity	SoyBase	N/A	ISS
KOG1575	KOG	Voltage-gated shaker-like K+ channel, subunit beta/KCNAB	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF7	Panther	OXIDOREDUCTASE	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_B9SSU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldo-keto reductase, putative n=1 Tax=Ricinus communis RepID=B9SSU2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M4E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4E6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g39470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g39470 not represented in the dataset	Glyma13g39470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g39470

Paralog	Evidence	Comments
Glyma12g30830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g39470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g318000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g39470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g39470

Limit To All Plant Sequences

>Glyma13g39470.2   sequence type=transcript   gene model=Glyma13g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAATTAAAATGATAAAAACATATGGTGGAGGGCAATGGATGCTGATAAAGGATAAAGCACTGACGAAGCGACACTGTGACCGTGTTCTGCTAGAGCTGTTATAGGCACTTGAGCAATTTGGAAATGTCGGATTTATTGCGGCATTCTTTGAGCAAATTCACTTTCAGTCCAAATGGAACACCAACTGGGAGAGAAAAAGTAACGGTAAAACATAAGCATCTGAGACCATTTCAGTGTGTGCTGACACAGGATAACAGAAGCATTGTCGTCAAGAATGGCAATGATTCATTGGATATATGCCGGGTTGTGAATGGAATGTGGCAGACGAGTGGTGGATGGGGCAGAGCCGATAGGGATGATGCTGTTGATGCTATGCTTAAATATGTTGATGCTGGCCTCGCCACTTTTGATATGGCTGATATATATGGACCTGCTGAAGATCTATATGGGATTTTCATTAATCGAGTTCGTCGAGAGCGTCCTGCTGAATTGTTGGAACAGGTCAGAGGTCTCACTAAGTGGGTTCCTCCGCCAGTTAAGATGACTAGTAGCTATGTAAGAGACAGCATCAATGTTTCAAGGAAGAGAATGGATGTGGAATCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACTCGAATCCAGGCTACCTGGATGCACTAAAACACCTAACAGATTTGAAAGAAGAAGGTAAAATCAAGACTGTGGCTCTGACAAATTTTGATACGGAGAGATTACAAATTATTCTTGAAAATGAGGTTCCTGTTGTAAGCAATCAGGTGCAACATTCCCTTGTTGATATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCATACAGGAGTCAAACTTATAACGTATGGAACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAGCTATTCCTTTTGCTGGTCCTGCAATAAACACTCCCTCCCTCCAAAAGTACAAAAGGATGGTAGATGCTTGGGGAGGATGGAGTTTGTTCCAGGGACTGCTTCGGACTCTTAAACAAGTAGCTTCTAAACATGGCGTATCGATCGCAACTGTTGCTGTGAAGTATATACTAGATCAGCCTGCAGTAGCAGGATCAATGGTTGGTGTCAGACTTGGCTTGGCAGAACATATTCAAGATACCAATGCTATCTTTTCACTTGTTCTCGATGAAGATGACGTGAACAGCATAAGAGAAGCCACAGCGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGATTGTGGAGATGAGTACAGGCGTGCATGAGTCATGTTGGCTTATCAACCTGGTGAAGTGCTTTAATTTATATAGGACAAGGGGATGGAAAAAAAGGGAGGGGGACACAGGAAAAGTGTTCAAGCTCAATTTTTTGTCAGTTGAAGAATTTGTGTGTAATACTTTTATGGATTACCCAGTAATGATCAAAAGACAAAATAGATGAAAGGAGGAAGTAATGTATTCTGTAGTATATATCTTGTGAGATTTATGCAAACTTTCCTCACATATTGGCCACCTCAAAGTATAGAAACTTTGGTGAATCACTGAACAAGAATTAGACATTGCTCTGTTTAAGTTGATTTTTGCATGGAAGGAAGTAGTCAATGATCCATCGTGCCAGCTTTGCTTTAAGTCTGTTTAATAACGAATACACTAATACGATAAATTATTTCTATATTATTATCCAATCTTATATATGAAAATTTTGTTTATTT

Coding sequences of Glyma13g39470

Limit To All Plant Sequences

>Glyma13g39470.1   sequence type=CDS   gene model=Glyma13g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAATAGTTAGCCACCACCACCGCCTATTCTCCGCCGCCACGCGCTTCAATTCCACTGGCAGAGACTCGCGGCGGCAAAGGAGCGGCGCAAACTCGGTCCGGTGCGCTGACGTAAGCACGGTCACGAGCGAGAATCAGCGAGTGACGGTGAGTAACAGGAGCGATTCGCTGGAGATATGCCGCGTGCTGAACGGAATGTGGCAGACCAGCGGCGGATGGGGCCGAATCGACCGAGACGACGCCGTCGAGGCTATGCTTCGCTACGCCGACGCCGGCCTAACTACCTTCGACATGGCCGATCACTATGGACCTGCTGAAGATCTATATGGGATTTTCATTAATCGAGTTCGTCGAGAGCGTCCTGCTGAATTGTTGGAACAGGTCAGAGGTCTCACTAAGTGGGTTCCTCCGCCAGTTAAGATGACTAGTAGCTATGTAAGAGACAGCATCAATGTTTCAAGGAAGAGAATGGATGTGGAATCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACTCGAATCCAGGCTACCTGGATGCACTAAAACACCTAACAGATTTGAAAGAAGAAGGTAAAATCAAGACTGTGGCTCTGACAAATTTTGATACGGAGAGATTACAAATTATTCTTGAAAATGAGGTTCCTGTTGTAAGCAATCAGGTGCAACATTCCCTTGTTGATATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCATACAGGAGTCAAACTTATAACGTATGGAACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAGCTATTCCTTTTGCTGGTCCTGCAATAAACACTCCCTCCCTCCAAAAGTACAAAAGGATGGTAGATGCTTGGGGAGGATGGAGTTTGTTCCAGGGACTGCTTCGGACTCTTAAACAAGTAGCTTCTAAACATGGCGTATCGATCGCAACTGTTGCTGTGAAGTATATACTAGATCAGCCTGCAGTAGCAGGATCAATGGTTGGTGTCAGACTTGGCTTGGCAGAACATATTCAAGATACCAATGCTATCTTTTCACTTGTTCTCGATGAAGATGACGTGAACAGCATAAGAGAAGCCACAGCGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGATTGTGGAGATGAGTACAGGCGTGCATGA

>Glyma13g39470.2   sequence type=CDS   gene model=Glyma13g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGATTTATTGCGGCATTCTTTGAGCAAATTCACTTTCAGTCCAAATGGAACACCAACTGGGAGAGAAAAAGTAACGGTAAAACATAAGCATCTGAGACCATTTCAGTGTGTGCTGACACAGGATAACAGAAGCATTGTCGTCAAGAATGGCAATGATTCATTGGATATATGCCGGGTTGTGAATGGAATGTGGCAGACGAGTGGTGGATGGGGCAGAGCCGATAGGGATGATGCTGTTGATGCTATGCTTAAATATGTTGATGCTGGCCTCGCCACTTTTGATATGGCTGATATATATGGACCTGCTGAAGATCTATATGGGATTTTCATTAATCGAGTTCGTCGAGAGCGTCCTGCTGAATTGTTGGAACAGGTCAGAGGTCTCACTAAGTGGGTTCCTCCGCCAGTTAAGATGACTAGTAGCTATGTAAGAGACAGCATCAATGTTTCAAGGAAGAGAATGGATGTGGAATCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACTCGAATCCAGGCTACCTGGATGCACTAAAACACCTAACAGATTTGAAAGAAGAAGGTAAAATCAAGACTGTGGCTCTGACAAATTTTGATACGGAGAGATTACAAATTATTCTTGAAAATGAGGTTCCTGTTGTAAGCAATCAGGTGCAACATTCCCTTGTTGATATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCATACAGGAGTCAAACTTATAACGTATGGAACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAGCTATTCCTTTTGCTGGTCCTGCAATAAACACTCCCTCCCTCCAAAAGTACAAAAGGATGGTAGATGCTTGGGGAGGATGGAGTTTGTTCCAGGGACTGCTTCGGACTCTTAAACAAGTAGCTTCTAAACATGGCGTATCGATCGCAACTGTTGCTGTGAAGTATATACTAGATCAGCCTGCAGTAGCAGGATCAATGGTTGGTGTCAGACTTGGCTTGGCAGAACATATTCAAGATACCAATGCTATCTTTTCACTTGTTCTCGATGAAGATGACGTGAACAGCATAAGAGAAGCCACAGCGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGATTGTGGAGATGAGTACAGGCGTGCATGA

Predicted protein sequences of Glyma13g39470

Limit To All Plant Sequences

>Glyma13g39470.1   sequence type=predicted peptide   gene model=Glyma13g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATIVSHHHRLFSAATRFNSTGRDSRRQRSGANSVRCADVSTVTSENQRVTVSNRSDSLEICRVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPAELLEQVRGLTKWVPPPVKMTSSYVRDSINVSRKRMDVESLDMLQFHWWDYSNPGYLDALKHLTDLKEEGKIKTVALTNFDTERLQIILENEVPVVSNQVQHSLVDMRPQQRMAELCQHTGVKLITYGTVMGGLLSEKFLDTNIAIPFAGPAINTPSLQKYKRMVDAWGGWSLFQGLLRTLKQVASKHGVSIATVAVKYILDQPAVAGSMVGVRLGLAEHIQDTNAIFSLVLDEDDVNSIREATAKGKDLLKVIGDCGDEYRRA*

>Glyma13g39470.2   sequence type=predicted peptide   gene model=Glyma13g39470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDLLRHSLSKFTFSPNGTPTGREKVTVKHKHLRPFQCVLTQDNRSIVVKNGNDSLDICRVVNGMWQTSGGWGRADRDDAVDAMLKYVDAGLATFDMADIYGPAEDLYGIFINRVRRERPAELLEQVRGLTKWVPPPVKMTSSYVRDSINVSRKRMDVESLDMLQFHWWDYSNPGYLDALKHLTDLKEEGKIKTVALTNFDTERLQIILENEVPVVSNQVQHSLVDMRPQQRMAELCQHTGVKLITYGTVMGGLLSEKFLDTNIAIPFAGPAINTPSLQKYKRMVDAWGGWSLFQGLLRTLKQVASKHGVSIATVAVKYILDQPAVAGSMVGVRLGLAEHIQDTNAIFSLVLDEDDVNSIREATAKGKDLLKVIGDCGDEYRRA*

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