|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G21510 | AT | Annotation by Michelle Graham. TAIR10: histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154 | SoyBase | E_val: 1.00E-16 | ISS |
GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
GO:0000160 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system | SoyBase | N/A | ISS |
GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
GO:0015698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inorganic anion transport | SoyBase | N/A | ISS |
GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
GO:0031537 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process | SoyBase | N/A | ISS |
GO:0048831 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of shoot development | SoyBase | N/A | ISS |
GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
GO:0080036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0009927 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity | SoyBase | N/A | ISS |
GO:0043424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding | SoyBase | N/A | ISS |
KOG4747 | KOG | Two-component phosphorelay intermediate involved in MAP kinase cascade regulation | JGI | ISS | |
UniRef100_B9T5M9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histidine-containing phosphotransfer protein, putative n=1 Tax=Ricinus communis RepID=B9T5M9_RICCO | SoyBase | E_val: 1.00E-22 | ISS |
UniRef100_F6HHH5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HHH5_VITVI | SoyBase | E_val: 8.00E-41 | ISS |
Glyma13g39465 not represented in the dataset |
Glyma13g39465 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.13g317900 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39465.1 sequence type=CDS gene model=Glyma13g39465 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCATGTCAATTCTCAAAGGACTCTTGCAAGGATACATGAAATCATTGTTTGACGAGGGGGTGGTGAATGATCAATTTAACATGATTGTGGCTTTGAAACGCATTGGAGAACCAGATCGTGTGGTGCAGTTGATAGAAACATATTTTTCAAATGTTGAAAGGATCCTTTTTGAGCTTTCGCGTCATGTTGATAATCCAAAAGTTAGCTTTTGTAAGTTGGCATCTCTTGCTCGTGAAATAGAAGATAAGAGTACAAGTATTGGTGCAGAGCAAATGAAGCTTGCATGTTCTGATGTCATCAAAGCTTGTAATGAGAAGCACCAAGAAAATTTTTCTCGATCCATGTCATGGTTAAAAATTGAGTTTAGTAAGACCAAGAACAAGTTGGAGGCCTTTGTACAGATGGAGCGAAGGATTATCAGACTTGAGATTTCTCAATCACCAGCTTCTACTTCTCAATCACCAAACTAG
>Glyma13g39465.1 sequence type=predicted peptide gene model=Glyma13g39465 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTMSILKGLLQGYMKSLFDEGVVNDQFNMIVALKRIGEPDRVVQLIETYFSNVERILFELSRHVDNPKVSFCKLASLAREIEDKSTSIGAEQMKLACSDVIKACNEKHQENFSRSMSWLKIEFSKTKNKLEAFVQMERRIIRLEISQSPASTSQSPN*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||