SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16650 | AT | Annotation by Michelle Graham. TAIR10: proteinaceous RNase P 2 | chr2:7215937-7218061 REVERSE LENGTH=528 | SoyBase | E_val: 0 | ISS |
| GO:0001682 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA 5'-leader removal | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0043144 | GO-bp | Annotation by Michelle Graham. GO Biological Process: snoRNA processing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004526 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity | SoyBase | N/A | ISS |
| KOG1347 | KOG | Uncharacterized membrane protein, predicted efflux pump | JGI | ISS | |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF11977 | PFAM | Zc3h12a-like Ribonuclease domain | JGI | ISS | |
| UniRef100_B9SST8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9SST8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4E5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4E5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g39460 not represented in the dataset |
Glyma13g39460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g30840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g317800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39460.2 sequence type=transcript gene model=Glyma13g39460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCCTCTCATCCCAACCAAACCCAGGTGACCATATAACAAGTACATTGTCACAATGTCACTCCATATCCATGTCTGGGCCGAAGAGCAAGCCCATGGATTTTGGGCCCCAATCACGAGTAACTGCCATCGTTTTGCAACGAAGCCCAGGAAAAGAAAAACCGCCATCTAGGGCTTTAAACTAACTAAACACTGCAAATCCTCACAGCAAAACTTCCGAATCTGACCCTTCAATGGAGGAGCACCCGAAGAAGAAGAAGAAAGGCTGCCGAAACCCCGAGACCAAGTTCCAATTCGAGTTGAACTCATGTTCCAAAGCCAAGGACCTCCGCGGCGCGATATCCCTCTATGACGATGCCGTTTCGAACAACACCCGCCTCAACCAGCACCACTTCAACGCCCTCCTCTACCTCTGCTCCAACTCCGTCGCCGACCCCTCCCTTAAGCCCACTGCCCTCGACTACGGCTTCCGCGCCTTCCGCCACATGTCCGCACTCGCCGTCCTCCCCAACGAGGCCACCGTCACCGCCGTCGCGCGCCTCGCTGCGGCGAAAGGCGACGCGGATTACGCCTTCGAGTTGGTGAAGAGCATGGGCAAGAACTATAACAACGCTTTGCCGAGGCTAAGAACCTACGATCCTGCTCTGTTCTGTTTCTGTGAAATGCTTGACGCGGATAAGGCCTATGAGGTGGAGGAGCATATGAATGGGGTTGGAGTGAGCTTAGAAGAGGCAGAACTCGCCGCGCTTTTGAAGGCCTGGCTTGAAAAGCATGCCTCTTATGAAGCTATAGTGGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCCGATGGTGGATTCAACATTTCTCAGCTTGATGATGTTGTGAAAGAACTGTACAATCGGAGTGGGAAGAAATGGCCGCTTGTTGTGCTGCACAACAAGCGTCTAAGAGGGCTGATGGAAAATCCTTCTAGCAGAAGACTGGTGGAGGAGTGGATGAAAAATGGTGTACTGTATACAACTCCAAATGGATCCAATGATGATTGGTATTGGCTCTTTGCTGCAGTTAAACTTAGGTGCTTGCTTGTGACAAATGATGAAATGCGAGATCACATATTTGAACTCATAGGAAGCAACTTTTTTAACCAGTGGAAAGAAAGACATCAGGTTCACTACACTTTTGTGAAAGGAAACCTAAAACTTCAGATGCCACCATCATATTCATTGGTTATCCAGGAATCAGAAAAAGGTTATTGGCATGTACCCCTAGTATCAGGCACTAGCTGTGAGTCCACGAGATGTTGGCTCTGCATTACTCGGCCAAGTGGTCATGATGCTGTCGCTACTGTTTCTAATGGTGTTAGTAGCTTGGATTCCCAAGTCGATGAAAACAGTGCCACTTCCATCGCTGGTAAAAGAAAAGAGAGGTCTCCTCCTTCATGATAAATTTTTCCATGGGCTTGGCCTTTGTTTGACTGCTTTGGTTACTGGTGGCAAGATAAACGGCAGCAACCTGCTTTGGGGTGACTACACATGATTTTAAGATAATTAAAAGGGTACATTTTTAACCCCTCCCAATAGACCCACAAAGTAAGTTATACTGTTTAATCTCATTGTTGTAATTATGTCAGAGGTTGTGTGGGGTTTCAGTCATGGTTCCAAAGAGGGGGGTAGTGGTTATAGTGGCTGGTACCTTGCCTTCCGCTGGACTCTATGCAATGAATGAATAATCATCAACTAGTCCAATTATGAAGTTCGTTACTTTGTTCCAGAACTGAAGTTCAACAATTAAATTCATTTTATAAATTTTCTTAATAGAGAAAAATTAAATGA
>Glyma13g39460.1 sequence type=CDS gene model=Glyma13g39460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGCACCCGAAGAAGAAGAAGAAAGGCTGCCGAAACCCCGAGACCAAGTTCCAATTCGAGTTGAACTCATGTTCCAAAGCCAAGGACCTCCGCGGCGCGATATCCCTCTATGACGATGCCGTTTCGAACAACACCCGCCTCAACCAGCACCACTTCAACGCCCTCCTCTACCTCTGCTCCAACTCCGTCGCCGACCCCTCCCTTAAGCCCACTGCCCTCGACTACGGCTTCCGCGCCTTCCGCCACATGTCCGCACTCGCCGTCCTCCCCAACGAGGCCACCGTCACCGCCGTCGCGCGCCTCGCTGCGGCGAAAGGCGACGCGGATTACGCCTTCGAGTTGGTGAAGAGCATGGGCAAGAACTATAACAACGCTTTGCCGAGGCTAAGAACCTACGATCCTGCTCTGTTCTGTTTCTGTGAAATGCTTGACGCGGATAAGGCCTATGAGGTGGAGGAGCATATGAATGGGGTTGGAGTGAGCTTAGAAGAGGCAGAACTCGCCGCGCTTTTGAAGGTGAGTGCGCGTTGTGGTAGAGTGGATAAGGTGTATGAGTATTTGCACAGGCTTAGGAGCTCTGTGAGGTGTGTTAGTGAGTCCACTGCGGTGGTTATTGAGGAGTGGTTTCGGGGCAGCAAGGCCTCTGAGGTTGGTGAGGCAGAATTCGATGCCGGGCGAGTTAAAGAGGGAGTTTTGAGGAATGGGGGAGGGTGGCATGGTCAGGGATGGGTTGGGAAAGGGGATTGGGTTGTGAGCAGAACGAGTGTTGTTGCTGATGGGCATTGTTGCTGTTGTGGGCAGCAATTGGTTTGTGTTGATATTGATGATGTGGAGACGGAGAAGTTTGCAGGGTCTGTTGCTGCCTTGGCCTTTGAAAGAGAGGTCAAGGCCAATTTTAGTGAATTTCAGGCCTGGCTTGAAAAGCATGCCTCTTATGAAGCTATAGTGGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCCGATGGTGGATTCAACATTTCTCAGCTTGATGATGTTGTGAAAGAACTGTACAATCGGAGTGGGAAGAAATGGCCGCTTGTTGTGCTGCACAACAAGCGTCTAAGAGGGCTGATGGAAAATCCTTCTAGCAGAAGACTGGTGGAGGAGTGGATGAAAAATGGTGTACTGTATACAACTCCAAATGGATCCAATGATGATTGGTATTGGCTCTTTGCTGCAGTTAAACTTAGGTGCTTGCTTGTGACAAATGATGAAATGCGAGATCACATATTTGAACTCATAGGAAGCAACTTTTTTAACCAGTGGAAAGAAAGACATCAGGTTCACTACACTTTTGTGAAAGGAAACCTAAAACTTCAGATGCCACCATCATATTCATTGGTTATCCAGGAATCAGAAAAAGGTTATTGGCATGTACCCCTAGTATCAGGCACTAGCTGTGAGTCCACGAGATGTTGGCTCTGCATTACTCGGCCAAGTGGTCATGATGCTGTCGCTACTGTTTCTAATGGTGTTAGTAGCTTGGATTCCCAAGTCGATGAAAACAGTGCCACTTCCATCGCTGGTAAAAGAAAAGAGAGGTCTCCTCCTTCATGA >Glyma13g39460.2 sequence type=CDS gene model=Glyma13g39460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGCACCCGAAGAAGAAGAAGAAAGGCTGCCGAAACCCCGAGACCAAGTTCCAATTCGAGTTGAACTCATGTTCCAAAGCCAAGGACCTCCGCGGCGCGATATCCCTCTATGACGATGCCGTTTCGAACAACACCCGCCTCAACCAGCACCACTTCAACGCCCTCCTCTACCTCTGCTCCAACTCCGTCGCCGACCCCTCCCTTAAGCCCACTGCCCTCGACTACGGCTTCCGCGCCTTCCGCCACATGTCCGCACTCGCCGTCCTCCCCAACGAGGCCACCGTCACCGCCGTCGCGCGCCTCGCTGCGGCGAAAGGCGACGCGGATTACGCCTTCGAGTTGGTGAAGAGCATGGGCAAGAACTATAACAACGCTTTGCCGAGGCTAAGAACCTACGATCCTGCTCTGTTCTGTTTCTGTGAAATGCTTGACGCGGATAAGGCCTATGAGGTGGAGGAGCATATGAATGGGGTTGGAGTGAGCTTAGAAGAGGCAGAACTCGCCGCGCTTTTGAAGGCCTGGCTTGAAAAGCATGCCTCTTATGAAGCTATAGTGGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCCGATGGTGGATTCAACATTTCTCAGCTTGATGATGTTGTGAAAGAACTGTACAATCGGAGTGGGAAGAAATGGCCGCTTGTTGTGCTGCACAACAAGCGTCTAAGAGGGCTGATGGAAAATCCTTCTAGCAGAAGACTGGTGGAGGAGTGGATGAAAAATGGTGTACTGTATACAACTCCAAATGGATCCAATGATGATTGGTATTGGCTCTTTGCTGCAGTTAAACTTAGGTGCTTGCTTGTGACAAATGATGAAATGCGAGATCACATATTTGAACTCATAGGAAGCAACTTTTTTAACCAGTGGAAAGAAAGACATCAGGTTCACTACACTTTTGTGAAAGGAAACCTAAAACTTCAGATGCCACCATCATATTCATTGGTTATCCAGGAATCAGAAAAAGGTTATTGGCATGTACCCCTAGTATCAGGCACTAGCTGTGAGTCCACGAGATGTTGGCTCTGCATTACTCGGCCAAGTGGTCATGATGCTGTCGCTACTGTTTCTAATGGTGTTAGTAGCTTGGATTCCCAAGTCGATGAAAACAGTGCCACTTCCATCGCTGGTAAAAGAAAAGAGAGGTCTCCTCCTTCATGA
>Glyma13g39460.1 sequence type=predicted peptide gene model=Glyma13g39460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEHPKKKKKGCRNPETKFQFELNSCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNSVADPSLKPTALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYAFELVKSMGKNYNNALPRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSLEEAELAALLKVSARCGRVDKVYEYLHRLRSSVRCVSESTAVVIEEWFRGSKASEVGEAEFDAGRVKEGVLRNGGGWHGQGWVGKGDWVVSRTSVVADGHCCCCGQQLVCVDIDDVETEKFAGSVAALAFEREVKANFSEFQAWLEKHASYEAIVDGANIGLYQQNFADGGFNISQLDDVVKELYNRSGKKWPLVVLHNKRLRGLMENPSSRRLVEEWMKNGVLYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHIFELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLVSGTSCESTRCWLCITRPSGHDAVATVSNGVSSLDSQVDENSATSIAGKRKERSPPS* >Glyma13g39460.2 sequence type=predicted peptide gene model=Glyma13g39460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEHPKKKKKGCRNPETKFQFELNSCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNSVADPSLKPTALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYAFELVKSMGKNYNNALPRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSLEEAELAALLKAWLEKHASYEAIVDGANIGLYQQNFADGGFNISQLDDVVKELYNRSGKKWPLVVLHNKRLRGLMENPSSRRLVEEWMKNGVLYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHIFELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLVSGTSCESTRCWLCITRPSGHDAVATVSNGVSSLDSQVDENSATSIAGKRKERSPPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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