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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33790 | AT | Annotation by Michelle Graham. TAIR10: Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493 | SoyBase | E_val: 0 | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0010025 | GO-bp | Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016620 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0080019 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA reductase (alcohol-forming) activity | SoyBase | N/A | ISS |
| KOG1221 | KOG | Acyl-CoA reductase | JGI | ISS | |
| PTHR11011 | Panther | MALE STERILITY PROTEIN 2-RELATED | JGI | ISS | |
| PTHR11011:SF1 | Panther | MALE STERILITY PROTEIN 2 | JGI | ISS | |
| PF03015 | PFAM | Male sterility protein | JGI | ISS | |
| PF07993 | PFAM | Male sterility protein | JGI | ISS | |
| UniRef100_G7IRD9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fatty acyl-CoA reductase n=1 Tax=Medicago truncatula RepID=G7IRD9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4E4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4E4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g39450 not represented in the dataset |
Glyma13g39450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g30850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g317700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39450.2 sequence type=transcript gene model=Glyma13g39450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTATTAAATCAGTACGTCTGATATTTGTTCGCGCTATTATAGTTTTTTTTTCCTTTTGTAGATCATAGGGAAGGACTTATTTAGATTGCTGAAGGAAAAACTGGGTACAAGATTCAATTCCTATGTGTCAGAAAAGTTGACAGTAGTACCTGGAGACATTTCTCAAGAGGACTTGAATTTGAAGGACCCAATTCTAGGGGAAGAGATTTTCAACCAAACAGATGTTATAGTTAATTTAGCTGCAACAACTAATTTTGATGAAAGATATGATGTTGCATTGGGTATAAATACATTAGGAGTTATGCATGTGTTGAGCTTCGCCAAAAAATGCGTCAAACTAAAAGTGCTAATCCACGTATCAACAGCTTATGTATGTGGAGAAAAAGAAGGACTCATACTAGAGGATCCACATCACTTTGGCGTGTCACTAAATGGAGTGCCCGGACTAGACATTGATATGGAAAAAAAAAATGTGGAGCAGAAATTGATTCAGCTTAGAGAGGAAGGAGCCACAGAACATGATATTGAATTGGCCATGAAGGACTTGGGTAGTGAAAGAGCAAAGATGTATGGATGGGCAAACACGTATGTCTTTACAAAGGCAATGGGAGAAATGCTTGTAGGAACTACAAAGGGAAACATGAACGTTGTAATTGTACGACCCACAATGGTTACTAGCACTCACACAGAACCTTTCCCTGGTTGGATTGAAGGTTTAAGAACCATAGACAGCATAGTTGTTGCGTACGGTAAAGGAAAACTAGCATGCTTCCTAGCGAATCTTAAGGCAGTTTTTGACGTGATACCGGCTGACATGGTGGTGAATACAATGCTAGTGGCCATGGTGGCTCATGCAAATCAACCTAGTGATATCATCTATCATTTGGGTTCCTCTGTTGTAAATCCAGTTAAGTACCTTAATCTTCGAGACTATAGCGTAAGATATTTCATGGAAAATCCTTGGATAAACAAGGATGGAAAGCCCGTCAAGGTTGGCAAAGTTACCATATTGAGCAACATGGATAGCTTCCGCAAATACATGTACATTCGTTACCTGCTTCCCTTAAAGGGGCTAGAGCTGGTCAATGCAGTTTCATGCCAGTATTTTCAGAAAATGTATCTTGACTTCAATCGGAAGATCCGTACTGTCATGCGATTGGTTGAACTTTACAAGCCTTACTTGTTCTTCAATGGGGTGTTTGATAATATGAACACAGAAAAGTTATTATCATCGGCAAGACAAGGTGGGGTAGAGACGGAATTTTTTTACTTTGACCCAAAAATGATTGATTGGGAGGACTATTTCATCAATATCCATTTTCCTGGTATCATCAAGCATGCCTTAAAATGACCCGTAATTACGTACTATGCAGAAGCCATTTTAGCGTTTATCATTTGAAGCTTGAATTTGTTGTATTCAAATTGGTGCTGGCGAGTTTATATGTTTGATATATTATATATATGCAGTGAATATTTTGTACTTTGTTCCTCAGTTCCTTGTCCATGTTAAAATTGAGTTTTCTCAGGTATGAAGTTGGAGACACCCAAGTGCGCTAAATTCGCT
>Glyma13g39450.1 sequence type=CDS gene model=Glyma13g39450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGGGAAGCATAATTCACTTCCTTCAAGATAAGACCATTTTAGTCACTGGTGCCACTGGCTTCCTCGCAAAAATTTTTGTGGAAAAAATATTGAGGGTTCAACCAAATGTGAAGAAACTTTACCTTCTTTTGAGAGCCAGGGATACTGAATCTGCTACTCAACGTTTACATGCTGAGATCATAGGGAAGGACTTATTTAGATTGCTGAAGGAAAAACTGGGTACAAGATTCAATTCCTATGTGTCAGAAAAGTTGACAGTAGTACCTGGAGACATTTCTCAAGAGGACTTGAATTTGAAGGACCCAATTCTAGGGGAAGAGATTTTCAACCAAACAGATGTTATAGTTAATTTAGCTGCAACAACTAATTTTGATGAAAGATATGATGTTGCATTGGGTATAAATACATTAGGAGTTATGCATGTGTTGAGCTTCGCCAAAAAATGCGTCAAACTAAAAGTGCTAATCCACGTATCAACAGCTTATGTATGTGGAGAAAAAGAAGGACTCATACTAGAGGATCCACATCACTTTGGCGTGTCACTAAATGGAGTGCCCGGACTAGACATTGATATGGAAAAAAAAAATGTGGAGCAGAAATTGATTCAGCTTAGAGAGGAAGGAGCCACAGAACATGATATTGAATTGGCCATGAAGGACTTGGGTAGTGAAAGAGCAAAGATGTATGGATGGGCAAACACGTATGTCTTTACAAAGGCAATGGGAGAAATGCTTGTAGGAACTACAAAGGGAAACATGAACGTTGTAATTGTACGACCCACAATGGTTACTAGCACTCACACAGAACCTTTCCCTGGTTGGATTGAAGGTTTAAGAACCATAGACAGCATAGTTGTTGCGTACGGTAAAGGAAAACTAGCATGCTTCCTAGCGAATCTTAAGGCAGTTTTTGACGTGATACCGGCTGACATGGTGGTGAATACAATGCTAGTGGCCATGGTGGCTCATGCAAATCAACCTAGTGATATCATCTATCATTTGGGTTCCTCTGTTGTAAATCCAGTTAAGTACCTTAATCTTCGAGACTATAGCGTAAGATATTTCATGGAAAATCCTTGGATAAACAAGGATGGAAAGCCCGTCAAGGTTGGCAAAGTTACCATATTGAGCAACATGGATAGCTTCCGCAAATACATGTACATTCGTTACCTGCTTCCCTTAAAGGGGCTAGAGCTGGTCAATGCAGTTTCATGCCAGTATTTTCAGAAAATGTATCTTGACTTCAATCGGAAGATCCGTACTGTCATGCGATTGGTTGAACTTTACAAGCCTTACTTGTTCTTCAATGGGGTGTTTGATAATATGAACACAGAAAAGTTATTATCATCGGCAAGACAAGGTGGGGTAGAGACGGAATTTTTTTACTTTGACCCAAAAATGATTGATTGGGAGGACTATTTCATCAATATCCATTTTCCTGGTATCATCAAGCATGCCTTAAAATGA >Glyma13g39450.2 sequence type=CDS gene model=Glyma13g39450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATGTGTTGAGCTTCGCCAAAAAATGCGTCAAACTAAAAGTGCTAATCCACGTATCAACAGCTTATGTATGTGGAGAAAAAGAAGGACTCATACTAGAGGATCCACATCACTTTGGCGTGTCACTAAATGGAGTGCCCGGACTAGACATTGATATGGAAAAAAAAAATGTGGAGCAGAAATTGATTCAGCTTAGAGAGGAAGGAGCCACAGAACATGATATTGAATTGGCCATGAAGGACTTGGGTAGTGAAAGAGCAAAGATGTATGGATGGGCAAACACGTATGTCTTTACAAAGGCAATGGGAGAAATGCTTGTAGGAACTACAAAGGGAAACATGAACGTTGTAATTGTACGACCCACAATGGTTACTAGCACTCACACAGAACCTTTCCCTGGTTGGATTGAAGGTTTAAGAACCATAGACAGCATAGTTGTTGCGTACGGTAAAGGAAAACTAGCATGCTTCCTAGCGAATCTTAAGGCAGTTTTTGACGTGATACCGGCTGACATGGTGGTGAATACAATGCTAGTGGCCATGGTGGCTCATGCAAATCAACCTAGTGATATCATCTATCATTTGGGTTCCTCTGTTGTAAATCCAGTTAAGTACCTTAATCTTCGAGACTATAGCGTAAGATATTTCATGGAAAATCCTTGGATAAACAAGGATGGAAAGCCCGTCAAGGTTGGCAAAGTTACCATATTGAGCAACATGGATAGCTTCCGCAAATACATGTACATTCGTTACCTGCTTCCCTTAAAGGGGCTAGAGCTGGTCAATGCAGTTTCATGCCAGTATTTTCAGAAAATGTATCTTGACTTCAATCGGAAGATCCGTACTGTCATGCGATTGGTTGAACTTTACAAGCCTTACTTGTTCTTCAATGGGGTGTTTGATAATATGAACACAGAAAAGTTATTATCATCGGCAAGACAAGGTGGGGTAGAGACGGAATTTTTTTACTTTGACCCAAAAATGATTGATTGGGAGGACTATTTCATCAATATCCATTTTCCTGGTATCATCAAGCATGCCTTAAAATGA
>Glyma13g39450.1 sequence type=predicted peptide gene model=Glyma13g39450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELGSIIHFLQDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRARDTESATQRLHAEIIGKDLFRLLKEKLGTRFNSYVSEKLTVVPGDISQEDLNLKDPILGEEIFNQTDVIVNLAATTNFDERYDVALGINTLGVMHVLSFAKKCVKLKVLIHVSTAYVCGEKEGLILEDPHHFGVSLNGVPGLDIDMEKKNVEQKLIQLREEGATEHDIELAMKDLGSERAKMYGWANTYVFTKAMGEMLVGTTKGNMNVVIVRPTMVTSTHTEPFPGWIEGLRTIDSIVVAYGKGKLACFLANLKAVFDVIPADMVVNTMLVAMVAHANQPSDIIYHLGSSVVNPVKYLNLRDYSVRYFMENPWINKDGKPVKVGKVTILSNMDSFRKYMYIRYLLPLKGLELVNAVSCQYFQKMYLDFNRKIRTVMRLVELYKPYLFFNGVFDNMNTEKLLSSARQGGVETEFFYFDPKMIDWEDYFINIHFPGIIKHALK* >Glyma13g39450.2 sequence type=predicted peptide gene model=Glyma13g39450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHVLSFAKKCVKLKVLIHVSTAYVCGEKEGLILEDPHHFGVSLNGVPGLDIDMEKKNVEQKLIQLREEGATEHDIELAMKDLGSERAKMYGWANTYVFTKAMGEMLVGTTKGNMNVVIVRPTMVTSTHTEPFPGWIEGLRTIDSIVVAYGKGKLACFLANLKAVFDVIPADMVVNTMLVAMVAHANQPSDIIYHLGSSVVNPVKYLNLRDYSVRYFMENPWINKDGKPVKVGKVTILSNMDSFRKYMYIRYLLPLKGLELVNAVSCQYFQKMYLDFNRKIRTVMRLVELYKPYLFFNGVFDNMNTEKLLSSARQGGVETEFFYFDPKMIDWEDYFINIHFPGIIKHALK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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