Glyma13g39340 - SoyBase

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Report for Sequence Feature Glyma13g39340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39969761
stop:	39972086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g39340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44460	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr3:16080115-16081722 REVERSE LENGTH=331	SoyBase	E_val: 3.00E-68	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0033613	GO-mf	Annotation by Michelle Graham. GO Molecular Function: activating transcription factor binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF35	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_G7ITR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Abscisic acid insensitive n=1 Tax=Medicago truncatula RepID=G7ITR9_MEDTR	SoyBase	E_val: 2.00E-130	ISS
UniRef100_UPI000233AABD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AABD related cluster n=1 Tax=unknown RepID=UPI000233AABD	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma13g39340

Locus	Gene Symbol	Protein Name
	FDL1339	Flowering Locus D-like gene 1339

Expression Patterns of Glyma13g39340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g39340

Paralog	Evidence	Comments
Glyma12g30975	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g39340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g317000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g39340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g39340

Limit To All Plant Sequences

>Glyma13g39340.2   sequence type=CDS   gene model=Glyma13g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCCAACAACCAAATCAAGAGGTGCCATTGCAAGAACCAGAAGCCACATTTTCTCAACTGAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATTGCAAGAATGGGAAGAGCTTAGGTTCCATGAACATGGATGAATTCCTTTCCAGCATTTGGAACTCAGATGATAACAACCAAGTTAACCCACCACTACCAACCCTTGATGAAGCTGCGAAGGGTAAAAGTGTAATAGCAACAGAACCCACCACAATTTCCCAGCCAGGCTCATTATCTGTCCCTCCTCCAATTTGCAAGAAAACAGTGGATGAAGTTTGGTCTCAGATCCACAAAAGCCAACCAGACCACAATGATGCTAACAATAGCCTTGCAAGGAATGAGCCACTACTCAAAAGGCAACAAACACTTGGGGAAATGACTTTAGAGGATTTCCTAGTAAAAGCTGGGGTGGTACAAGAATCATCATCACTATTCAAGTCTTCATTATTACCTCAGAATCAGATTGGTAACATTGCAAGTAATGGACCATTGGGTGCAGGTTATAGGTTGAGGCCTGTAATAGGGACAGGATCTAGTGTGTCTTGTAATGGACTTGAAACACAAAACATGTTGGCACAGAATAACAACTTAGTTGTAAAGGATCTCACTACAAATGGTGCTGTGGAGAAATGTCCAAGCTTGGGAGAATCAAATGGGAAGGGTAATAGGAAGAGGATCATTGATGGTCCTCCTGAAGTGGTAGTAGAGAGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCAGCTGCACGTTCTCGAGCACGAAGACAGGCATATACGGTGGAACTAGAAGCAGAGTTGAATCTGCTAAAGGAAGAGAACGAAAAGCTCAAACAAACTCTGGCTGAAGCTGAACGCAAGAGAAAACAAGAGATTTCTCAGAGAAAGCACACAACAATGGCTCAAAAGAGGACAGAAAATTTGAGGGCAATGAGGAGGCCTCTAAGCGCATCCTGGTGA

Predicted protein sequences of Glyma13g39340

Limit To All Plant Sequences

>Glyma13g39340.2   sequence type=predicted peptide   gene model=Glyma13g39340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLQQPNQEVPLQEPEATFSQLSKQNSILSLTLDEFYCKNGKSLGSMNMDEFLSSIWNSDDNNQVNPPLPTLDEAAKGKSVIATEPTTISQPGSLSVPPPICKKTVDEVWSQIHKSQPDHNDANNSLARNEPLLKRQQTLGEMTLEDFLVKAGVVQESSSLFKSSLLPQNQIGNIASNGPLGAGYRLRPVIGTGSSVSCNGLETQNMLAQNNNLVVKDLTTNGAVEKCPSLGESNGKGNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKEENEKLKQTLAEAERKRKQEISQRKHTTMAQKRTENLRAMRRPLSASW*

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