Glyma13g39240 - SoyBase

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Report for Sequence Feature Glyma13g39240

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39909079
stop:	39911602
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g39240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27480	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr2:11746811-11747885 FORWARD LENGTH=228	SoyBase	E_val: 1.00E-74	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0037	KOG	Ca2+-binding protein, EF-Hand protein superfamily	JGI		ISS
PTHR10183	Panther	CALPAIN	JGI		ISS
PTHR10183:SF16	Panther	CALPAIN-RELATED	JGI		ISS
UniRef100_G7ITU0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calpain-B n=2 Tax=Medicago truncatula RepID=G7ITU0_MEDTR	SoyBase	E_val: 8.00E-112	ISS
UniRef100_I1M4C2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M4C2_SOYBN	SoyBase	E_val: 5.00E-159	ISS

Expression Patterns of Glyma13g39240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g39240

Paralog	Evidence	Comments
Glyma12g31070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g39240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g316100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g39240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g39240

Limit To All Plant Sequences

>Glyma13g39240.2   sequence type=transcript   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGTACCGTTATCTCTCTGAACGTGTTCGTGCATTCCAAGCCAAGGTTGCAACTTACTAGCTAGCTATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTAAGTTAACTTTATCTGGGTCTTTGAAGAGAGTAACTTTTTTATTTTGGTCATTGAAAGATTTTTAGATCATTTTGATTTGGTCCTCGAAATGTTATTACATCAACTTGTCCTCAAATGATGTTTTTCTTTTTTCTGCATCAAAATAGTCAAAATACTTAATGTTGTCATACTGTGATAAAATAATGATTTGGGGGCCATTTTGATGTA

>Glyma13g39240.3   sequence type=transcript   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGTACCGTTATCTCTCTGAACGTGTTCGTGCATTCCAAGCCAAGGTTGCAACTTACTAGCTAGCTATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGTAAAACTCAATGAGCTTTTGAAGCTATGGACGTGCCTCTCATTTCTCTATTTCTTCTTCAGTGATATAGGCCAATTCACCTGTTCCATTGTTTGCTTTGCTTGATATATGTGGTTCCAGACATAGATGTCTATACTCTATCCTGTTGCATATGCATTATCTTCACTATGTGATATGATATGTGTGGTGAGAAATAAACATTTGGGTGGGTGTCATATGTTCATGTTTGAATAAATTACAGCACACGTGCTTTGGAAAAGAG

Coding sequences of Glyma13g39240

Limit To All Plant Sequences

>Glyma13g39240.1   sequence type=CDS   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTACACTTTCATACGACGCCTTTATGACTATGGTCCTTCCTTTCCTTGTATCTTATGATTGA

>Glyma13g39240.2   sequence type=CDS   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTAA

>Glyma13g39240.3   sequence type=CDS   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGTAAAACTCAATGAGCTTTTGAAGCTATGGACGTGCCTCTCATTTCTCTATTTCTTCTTCAGTGATATAGGCCAATTCACCTGTTCCATTGTTTGCTTTGCTTGA

Predicted protein sequences of Glyma13g39240

Limit To All Plant Sequences

>Glyma13g39240.1   sequence type=predicted peptide   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVECGMIIKGLTDKFKEKDTRYTGSATLSYDAFMTMVLPFLVSYD*

>Glyma13g39240.2   sequence type=predicted peptide   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVE*

>Glyma13g39240.3   sequence type=predicted peptide   gene model=Glyma13g39240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVECGMIIKVKLNELLKLWTCLSFLYFFFSDIGQFTCSIVCFA*

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