SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10230 | AT | Annotation by Michelle Graham. TAIR10: lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0045436 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lycopene beta cyclase activity | SoyBase | N/A | ISS |
| PTHR10617 | Panther | FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE | JGI | ISS | |
| PTHR10617:SF31 | Panther | gb def: bacteriochlorophyll synthase 43 kda subunit methanothermobacter thermautotrophi | JGI | ISS | |
| PF05834 | PFAM | Lycopene cyclase protein | JGI | ISS | |
| UniRef100_G7IHF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Capsanthin/capsorubin synthase, chromoplast n=1 Tax=Medicago truncatula RepID=G7IHF5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M4B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4B4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g39150 not represented in the dataset |
Glyma13g39150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g315200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39150.1 sequence type=CDS gene model=Glyma13g39150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCACTAGTTTCATGCTATTTTCTCCACCGCCTCTGCTCAAGCCTCACCAAGTACCCCTCACCACTCCATTCCCTCTTCCTCAAACCCATCACACAGCATCAAGAAACAAGAGGGTCCACAGCACCAGCAAATTCGGAAACTTTCTTGACTTCAAACCCGAGAACAAACCCGAATCCTTAGATTTTGACCTTCCATGGTGCCACCCTTCTGACCGCAATCGTTTTGATGTGATCATCATTGGTGCTGGCCCTGCAGGCACAAGGCTCGCCGAGCAAGTGTCCCTCTATGGAGTTAAGGTTTGTTGTGTTGATCCTGACCCTCTTTCTGTGTGGCCTAACAACTATGGTGTGTGGAGAGATGAGTTTGAGAGCCTTGGTCTTGAGGATTGCTTGGACAAAACATGGCCCATGGCTTGTGTTTATGTGGATGATGGCAAGACCAAGTATTTGGATCGGTGTTATGGGAGGGTTGGTAGGAGGAAGCTGAAGGAGAGATTGGTTCAAGGCTGTGTCTCCAATGGGGTTAGGTTTCACAAGGCAAAGGTGTGGCAAGTTCAGCACCAAGAGTTTGAGTCCAAAGTTTTGTGTGATGATGGGGTGGAATTGAAGGGGAGTTTGGTTGTTGATGCTAGTGGATTCGCAAGTAATTTTGTAGCATATGACAAGGTGAGACACCATGGTTTTCAGATTGCTCATGGTGTTTTGGCTGAGGTGGATGATCACCCTTTTGATTTGGACAAGATGGTTTTAATGGACTGGAGGGATTCTCATTTGGGGAATGAACCCTACTTGAGAGCTAGTAATTCAAGGTTTCCTACTTTCCTCTATGCAATGCCATTTAGTTCCAATTTGATATTTCTTGAGGAGACTTCCCTTGTGAGCCGTCCAGTGTTGTCTTACATGGAAGTGAAGAGGAGGATGGTTGCAAGGCTAAGGCACTTAGGCATTAGAGTGAAGAGGGTTTTGGAGGATGAGAAGTGTTTGATTCCAATGGGAGGACCTCTTCCAAGGATCCCCCAAGAAGTGATGGCTATTGGTGGCACTTCTGGGGTAGTGCACCCTTCCACAGGTTACATGGTGGCTAGAACAATGGCTGTGGCTCCTGTTGTGGCTTTTGCTATAACTCAGTGCCTTGGCTCCACCAGAATGATCAGGGGGAAACAACTTCATGATAAAGTTTGGAATAGCATGTGGCCAATTGAGAACAGGCTGGTAAGGGAATTTTACTCTTTTGGAATGGAGACTTTGTTGAAACTTGACTTGAATGGAAGCAGGAGTTTCTTTGATGCATTTTTTAACTTGAAACCTTATTACTGGCAAGGGTTCCTCTCTTCGAGGTTGACTTTGAATGAGCTTCTTTGGTTAAGCATATCACTCTTTGGACATGCCTCAAATCCATCCAGGTTTGATATTGTCACAAAGTGTCCTGTTCCAATGGCTAAGATGGTGGGCAATATCGCTTTGGAGTACATTGGATGA
>Glyma13g39150.1 sequence type=predicted peptide gene model=Glyma13g39150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTSFMLFSPPPLLKPHQVPLTTPFPLPQTHHTASRNKRVHSTSKFGNFLDFKPENKPESLDFDLPWCHPSDRNRFDVIIIGAGPAGTRLAEQVSLYGVKVCCVDPDPLSVWPNNYGVWRDEFESLGLEDCLDKTWPMACVYVDDGKTKYLDRCYGRVGRRKLKERLVQGCVSNGVRFHKAKVWQVQHQEFESKVLCDDGVELKGSLVVDASGFASNFVAYDKVRHHGFQIAHGVLAEVDDHPFDLDKMVLMDWRDSHLGNEPYLRASNSRFPTFLYAMPFSSNLIFLEETSLVSRPVLSYMEVKRRMVARLRHLGIRVKRVLEDEKCLIPMGGPLPRIPQEVMAIGGTSGVVHPSTGYMVARTMAVAPVVAFAITQCLGSTRMIRGKQLHDKVWNSMWPIENRLVREFYSFGMETLLKLDLNGSRSFFDAFFNLKPYYWQGFLSSRLTLNELLWLSISLFGHASNPSRFDIVTKCPVPMAKMVGNIALEYIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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