SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27300 | AT | Annotation by Michelle Graham. TAIR10: NTM1-like 8 | chr2:11680417-11681955 REVERSE LENGTH=335 | SoyBase | E_val: 1.00E-96 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF02365 | PFAM | No apical meristem (NAM) protein | JGI | ISS | |
| UniRef100_G7IHH0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7IHH0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AAB6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AAB6 related cluster n=1 Tax=unknown RepID=UPI000233AAB6 | SoyBase | E_val: 0 | ISS |
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Glyma13g39090 not represented in the dataset |
Glyma13g39090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g31211 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g314600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39090.2 sequence type=CDS gene model=Glyma13g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAAGGGGTTTCGAGGGAGGCTCAGATGTCGATTGCTGCTTCGTCCATGTTTCCTGGATTCAGATTCTGCCCTACCGATGAGGAGTTGATTTCTTATTACCTGAGGAAGAAGTTGGAGGGTCATGAGGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCATTCATTCAGTCAGACAACGAATGGTTCTTCTTCTCTCCCCGCGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGAGCAACTGAATGTGGATACTGGAAGGCAACTGGCAAAGAGCGAAATGTAAAGTCAGGTTCCAACATTATAGGAACGAAGCGGACTTTGGTGTTCCACTTAGGGCGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCACGAGTACTGCATTAATGACAAATCTCAGGAATCTTTGGTCATTTGTCGCCTCAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCGAATAGAGCTTCATCAAGTCAAAGGCATCCGGTGAATTCACATGAAAGTGGTTGTGCTATCTCAGGAGGTGGTATTGATCAAAGGGATGCTTGTGAGCAAGACAAAGAGGTTGGATGTAGCTCCAAGAGGGACAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTCTGTGTCCGAATCGAATCAGCGACCAGTTAACGAAGCTACTTTCACTGAATCTTCAGGTCAACCAAAGGAGGGGTATGAAGAGGATTGTTATGCAGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAGTCTTGGTAGAGAGTCACACAAGACCACAGGATCCTACACAGATGCAACCTGCACCACAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATTCTCGTGCAGTAGTTCGTTTCCCAAGCACAATGCACTCATCAAAGAATACCTTCTTTGCCAGAACAACCAACAGTTTGGTGGTATTAGCTTTCTTCGTTTTCACTTTGATGGTTCTATATTTTTTGTCCTTAGTGAGAGGACAAAAACAAGACAAGTATTGTGGGGAATTTTCGGGTGTAAATCATGATTAG
>Glyma13g39090.2 sequence type=predicted peptide gene model=Glyma13g39090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLEGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQESLVICRLKRNTEFRLSDASNRASSSQRHPVNSHESGCAISGGGIDQRDACEQDKEVGCSSKRDSSSYGSPSMEQIDSVSESNQRPVNEATFTESSGQPKEGYEEDCYAEILKDDIIKLDESSVLVESHTRPQDPTQMQPAPQGTAQRRIRLRVGNSKHSRAVVRFPSTMHSSKNTFFARTTNSLVVLAFFVFTLMVLYFLSLVRGQKQDKYCGEFSGVNHD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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