Glyma13g39050 - SoyBase

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Report for Sequence Feature Glyma13g39050

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39770577
stop:	39772813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g39050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06270	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:1912895-1913263 FORWARD LENGTH=122	SoyBase	E_val: 4.00E-18	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1M4A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4A4_SOYBN	SoyBase	E_val: 1.00E-80	ISS
UniRef100_Q9FNI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF02129.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNI1_ARATH	SoyBase	E_val: 2.00E-15	ISS

Expression Patterns of Glyma13g39050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g39050

Paralog	Evidence	Comments
Glyma12g31280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g39050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g314200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g39050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g39050

Limit To All Plant Sequences

>Glyma13g39050.2   sequence type=transcript   gene model=Glyma13g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAAACTTGTTAACATCAACGAGGTGGATATATAGATCTTGGATCCCATCAACTATCCCTCTAATGTTCAACCATTTCAACGCTTCCGACCACCCTTTAATTTTGATCCCGTCATTCTATATATGTAACATTTTGGTTTGTCTATAATTCCCTCAATTTTAGTTCCACAAGAGATTTTTACATTTTCTTTTGAAGCTTAATTGCCTCTCTTGAAGAACTGTTTCAATTGGTTCAACTTGATTTCGATCTTAAGGAACCTGACATCTCTTTCTGATCTCAAAGACTGAGTTAGAGGAAGAGTTACTTTGGTTGGAAAAGCTTTAACATCATGTGCAAAAGAAAGAGTCCAGGCTCAGAATTGAGGCCGCCGAGCAGGCCCACATCGCCTGAGTTATCATCGTCGACATCATCAGGTGAGTGGCCGGAATTCTCATCATCATCACCATCTGCTTCCTCGGCATCATATACATCGAAGATGCCGAAGGAGGGTATATGTGTATATTTCCCAGAGGCAGAAGAGGAGAACGTGCAACGTGCAAATGCTGCTCCAGAAACAAAGGCCATGGATCTCGTTGGTTGTCCTCGATGCTTCATGTACGTCATGTTATCTGAGGCGGATCCAAAGTGCCCTAAGTGCAAGAGCACAGTGTTTCTTGAGTTTTTCAAAGCTGAAAACTTCAAGACGGACAATTGAGCTATGGGGAGACTTTATGGGAATTAATAAATAAATTAAATCCTTGTGGTTCTAGGACGTTTATTTATGCCTGTTTTGTTTTTGAAATCTGAAGCTTCAATTCATAGGACTATCTGTATCTTGTTTGAGAGTGAAGTTAAGTAAAGAATAAAGATTACGGGAGATATATGGTAGTGTAACGTGATGCCACTATATCTTGTTTGAGTCTTCCTATTTGATATATGTGCTTTTGTTAAGTTTGTCGTATATTTCGGTTAGTATAGTTTGAGTCTGACTGCTAATTGCTTTTCTTCAGTATGTCATCACAATGAATTGAGGTTGGAGCAGTGTGAATTCCTGCTGAGCATATATCCATTTTAGTTACATCACATCGAATTGTTTCATGAGCTGTGCTATATATCACGATCCAAATTCCAAGCAAGAGAACATGTTGGTTGAGAGTCTCATGTCCCCCTCTTTAGCAGGTTGTTGTCCCTGAGTTTCCATTCTGCCACACCTTCCAGCGATTCGAGCTTGACTTAAGATTTGATTTTGGTGGGAGATTTGGGATTGAGAGAGGAAAAATTTAAAAAAAAACTTTCTGCAGCGTCTAAATATGAAGGTGCTTTGAGTTTGCAAGAGCCATAGGGAACACAAATGAAAGGGATGACCAGATGAAAGGGGGTTTGAGAAGATGGATGAGTGGAAAACCGGGTAATTGGTTAGGAGTTTGGACCTTTGAGGAGATTAATCATCCATTACATTTAATATTTTATAATTTC

Coding sequences of Glyma13g39050

Limit To All Plant Sequences

>Glyma13g39050.1   sequence type=CDS   gene model=Glyma13g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAAAAGAAAGAGTCCAGGCTCAGAATTGAGGCCGCCGAGCAGGCCCACATCGCCTGAGTTATCATCGTCGACATCATCAGGTGAGTGGCCGGAATTCTCATCATCATCACCATCTGCTTCCTCGGCATCATATACATCGAAGATGCCGAAGGAGGGTATATGTGTATATTTCCCAGAGGCAGAAGAGGAGAACGTGCAACGTGCAAATGCTGCTCCAGAAACAAAGGCCATGGATCTCGTTGGTTGTCCTCGATGCTTCATGTACGTCATGTTATCTGAGGCGGATCCAAAGTGCCCTAAGTGCAAGAGCACAGTGTTTCTTGAGTTTTTCAAAGCTGAAAACTTCAAGACGGACAATTGA

>Glyma13g39050.2   sequence type=CDS   gene model=Glyma13g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAAAAGAAAGAGTCCAGGCTCAGAATTGAGGCCGCCGAGCAGGCCCACATCGCCTGAGTTATCATCGTCGACATCATCAGGTGAGTGGCCGGAATTCTCATCATCATCACCATCTGCTTCCTCGGCATCATATACATCGAAGATGCCGAAGGAGGGTATATGTGTATATTTCCCAGAGGCAGAAGAGGAGAACGTGCAACGTGCAAATGCTGCTCCAGAAACAAAGGCCATGGATCTCGTTGGTTGTCCTCGATGCTTCATGTACGTCATGTTATCTGAGGCGGATCCAAAGTGCCCTAAGTGCAAGAGCACAGTGTTTCTTGAGTTTTTCAAAGCTGAAAACTTCAAGACGGACAATTGA

Predicted protein sequences of Glyma13g39050

Limit To All Plant Sequences

>Glyma13g39050.1   sequence type=predicted peptide   gene model=Glyma13g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCKRKSPGSELRPPSRPTSPELSSSTSSGEWPEFSSSSPSASSASYTSKMPKEGICVYFPEAEEENVQRANAAPETKAMDLVGCPRCFMYVMLSEADPKCPKCKSTVFLEFFKAENFKTDN*

>Glyma13g39050.2   sequence type=predicted peptide   gene model=Glyma13g39050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCKRKSPGSELRPPSRPTSPELSSSTSSGEWPEFSSSSPSASSASYTSKMPKEGICVYFPEAEEENVQRANAAPETKAMDLVGCPRCFMYVMLSEADPKCPKCKSTVFLEFFKAENFKTDN*

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