SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60440 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299 | SoyBase | E_val: 1.00E-42 | ISS |
| GO:0009960 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endosperm development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| UniRef100_G7IU48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Medicago truncatula RepID=G7IU48_MEDTR | SoyBase | E_val: 1.00E-56 | ISS |
| UniRef100_I1M4A1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M4A1_SOYBN | SoyBase | E_val: 1.00E-112 | ISS |
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Glyma13g39016 not represented in the dataset |
Glyma13g39016 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g39016.1 sequence type=CDS gene model=Glyma13g39016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATCATCCGAAGCTAAGAAAAGCCGTGGGCGCCAAAGGATTGAGATTAAGAAAATGTGCAATGAGGCCAACCTCCAAGTCACGTTCTCGAAGCGCCGCAGCGGGCTTTTCAAGAAAGCCAGTGAGCTTAGCACTCTCTGCGGGGCTAGCGTGGCTCTGGTGGTGTTCTCGCCGGGGAAGAAGGTGTTCTCCTTCGGCCACCCCAGCGTGGATGGCGTGATAGAGCGCTATCTGACGCAGGGGCCAACGCCGTTGATGGATGTCCTACGCATGGCGGAACTGGAGGCGGAGAGGAAGCGAGCCCAGGAGCTCAGTGGGAAGGAGAGGGAGACCGAAGCCCATCTGTGGTGGGCCCGACCCGTGGAAGGGATGATCTCTATCGACAACCTGTACAAGTTGAAGAAAGCCTTTGAGGTGCTGAAGCAACAAGTGGCCGGTCTTGCTGATAGGGCTTTGTTGCAGTACTCTGTGGCTAATGGAAACCCGGGCCATCAGTTTTTTCCTGGGGCTTCTTCCTCAACCATTCCCAACGTTGTGCTTCAGCCACAACCACTGCCAGTGCCCCCCCAGATGTTCCCTCCCACTCCAAATATGATGATGCTGCCTCCGCCACCCATGTTTCAGAACTACATGCTTCCTGATGGGAGCATGATGAACCCCCATGGGTTTAATGACATGGGAATGGGAGGATTTGGAGGACCAGGGCCTTCTGGTTCTGGTGCTGGTGCTGGTGCTGGTGGTTTCTTTTGA
>Glyma13g39016.1 sequence type=predicted peptide gene model=Glyma13g39016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSEAKKSRGRQRIEIKKMCNEANLQVTFSKRRSGLFKKASELSTLCGASVALVVFSPGKKVFSFGHPSVDGVIERYLTQGPTPLMDVLRMAELEAERKRAQELSGKERETEAHLWWARPVEGMISIDNLYKLKKAFEVLKQQVAGLADRALLQYSVANGNPGHQFFPGASSSTIPNVVLQPQPLPVPPQMFPPTPNMMMLPPPPMFQNYMLPDGSMMNPHGFNDMGMGGFGGPGPSGSGAGAGAGGFF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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