SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27260 | AT | Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11669769-11670500 FORWARD LENGTH=243 | SoyBase | E_val: 2.00E-37 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03168 | PFAM | Late embryogenesis abundant protein | JGI | ISS | |
| UniRef100_I1M499 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M499_SOYBN | SoyBase | E_val: 4.00E-177 | ISS |
| UniRef100_Q9SVC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SVC7_ARATH | SoyBase | E_val: 5.00E-26 | ISS |
|
Glyma13g38990 not represented in the dataset |
Glyma13g38990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g313600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38990.2 sequence type=CDS gene model=Glyma13g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAAATCCCACCAAAGCTATGCCCGTTTCACACTCTTTCCTTTCTCTGGCTGATTCCACAGACACACACCGCTTTACTATTATGCAAGACCCTTCTCGCCCCGCCCCTCCTCCCTTCTACCACCAAAACGGCGGCCAGCCTCCTCCCCCCGCCGCCTCCGCCGCCATCGCCACCGGCTACCCCTACGCTGCCCAACAACAATACTACAACACCACTTACCCTCCTCCTCGCTCCTACGCCTCCCGCTCCTTCTTCCGCGCTTTCTTCGCCACCATGATCTGCCTCGCCGTCGTCTTCGGCGTCGTCCTCATCATCACCTGGCTCGTCCTCCGCCCCTCCCTCCCCCACTTCACCCTCCACTCCCTCTCCGTTTCCAACCTCTCCAGCACCTCCCAATCCCTCTCCGCCACGTGGCACCTCTCCTTCCTCGTCCGCAACGGCAACAAGAAGATGACCGTCTCCTACAACGCCCTCCGCTCTTCCATCTTCTACCGCCAAAACTACATCTCCGAGTCTCAGCTCGCTCCCTTCAGGCAGGACACCAGGTCCCAGACCACACTCAATGCCACCCTCACCGCCGCCGGCACCTACCTCGAGCCCAAACTGATCGACAATCTCAACGCCGAGAGGAACGCCAGCTCGGTCCTCTTCGACGTTCAGGTCGTCGCCGCCACCTCTTTCCGCTCCGGCTCGTGGAGGTTCAGGACGAGGGTTCTCAAGGTTCTGTGCCGCAAAGTACCCGTCGGCGTCTCGTCCAAGTCCAGCTCCGGTGATTTGGTCGGCGGAGATCGGGAATGTCAGGTGTGGACGTGA
>Glyma13g38990.2 sequence type=predicted peptide gene model=Glyma13g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MINPTKAMPVSHSFLSLADSTDTHRFTIMQDPSRPAPPPFYHQNGGQPPPPAASAAIATGYPYAAQQQYYNTTYPPPRSYASRSFFRAFFATMICLAVVFGVVLIITWLVLRPSLPHFTLHSLSVSNLSSTSQSLSATWHLSFLVRNGNKKMTVSYNALRSSIFYRQNYISESQLAPFRQDTRSQTTLNATLTAAGTYLEPKLIDNLNAERNASSVLFDVQVVAATSFRSGSWRFRTRVLKVLCRKVPVGVSSKSSSGDLVGGDRECQVWT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
