SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24670 | AT | Annotation by Michelle Graham. TAIR10: Cytidine/deoxycytidylate deaminase family protein | chr5:8448880-8451046 FORWARD LENGTH=400 | SoyBase | E_val: 1.00E-143 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG2771 | KOG | Subunit of tRNA-specific adenosine-34 deaminase | JGI | ISS | |
| PTHR11079 | Panther | CYTOSINE DEAMINASE | JGI | ISS | |
| PTHR11079:SF4 | Panther | CYTOSINE DEAMINASE-RELATED | JGI | ISS | |
| PF00383 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| UniRef100_G7L867 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA-specific adenosine deaminase-like protein n=1 Tax=Medicago truncatula RepID=G7L867_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M485 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M485_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma13g38830 not represented in the dataset |
Glyma13g38830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g312100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38830.2 sequence type=transcript gene model=Glyma13g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCACGCACCCAGTCTCAGCCATCCCAAATTCGACGCCGCGCCACCACAACCTCTTCAACGTCGGCGACGACGCGATTTCCGACGTTCTTCTTCTTCTGCTAGGTTATAGTTACGCACACTTAAGGGGAATCAGAAAAAGAGCAGGGCATGATGGATCAATGCTTGGTTGTGCACATCCCGGACAAGCAGCCGCATGACCTTCACCACCAACCCACTGAGAGTGTTTTTGCTTCAGCCATCGACCCTAAGCATGCCAACCAAATTGTAAGGCGTTTGAATCAGATAGCACCACTTGAAGATCTCCGTCATGTGAAACGAATTCAGAAGAAAGTTCTTGAAGGAGGACAAATAGAGCTATTGGTGATCTTGTGTCTGGCCCATGAAGGCAACAATCAACTGGATAATATGCCACCTCTTCTTCAGGAGTTGATCAGTTCCCATCAGTTGAGTCCTTTTATCACAAAAGTCTGCAAATACGCTGCAACATCAAAAGAAGAGTGGCAAGAGCAATGCAAATTTTGGCCAACATCATATCACCCCAGGACTTACAACATTGATGGCATTACTGGATTTAGCGAGGAGGACTCCCAATCAGTTTTGAAGTTTATGCAATCAGCTGTTGAGATGGCAACATCTGATGGCATGGTTGTTAATGCTGCAGTGATAGTGGATCCTTCAGCTAAGCAAATAATTTCAAGCGCATGTGATCAGATTTTTTCTTGGAACACTTGCAAAGACAACAACTGCTATAGAAAGCCAGAATTATCTAGTTCCCATCCTATAAGTTCCAGTAGATGTAATCCCCATGAACCATTGCATTCAAACAGTTCCTCCAATCAGCTTAAACAATCATATACAGACGTTGCTTGTTTATATCCTCGGCAATGGACTGAGCAGCAATCTCATTCACAGAGTTCATATTATTGGCACCCTTTGCGACATGCTGCCATTGTAGCTATAGAATCATCTGCTGCCAGGGATCGATACCTTTTTTCCAGTGAGGGAAACAGTGAAGATAGATATCTGGAATTGGATAGTGATAATTCTTCTTGGACTAGCTCTCCTGCAAAGAGACAGAAAACAGTGTGTGCAAATGGTGAGGATGATGATAGATTGAATGCTCATAGTCAGACTTCTGATCAGCCGCTGGCACGACCTTACTTATGCACTGGTTATGATATATATCTTGTTTGGGAACCATGCGCAATGTAAGCTTATAGAGTATATAGTTCTATAGCTTTGAATCATTTCTGTCTTTGCTGAGTTCCTTTGAAGTCTAAATAGGTCTTGTCTACTCATCTATGAAGGGAATATGAAGATAAGAGGCTGCCAATAGCATTCTGATTCTTTCTTTTTTAATGCCATGCAAATTTGAAGGGAATTCCTTTCTTCTTGATTCTTAGAATAGGAGAAATCCTTGAAATCTGATTCTCCTTTAATATGAAGTTTCACTTTCAGATAGTTAACCTTTTCCAAAGTAGTTGTTTTCTGATAAATTTGCCTTCCACTGTGATGTCAGGTGTGCAATGGCCCTTGTCCATCAGAGAATTAGGCGAATATTTTATGCTTTTCCAAATCCTAATGCCGGTGCCTTGGGTAGTGTTCACAGATTACAAGGAGAGAAAAGCTTAAATCATCATTATGCTGTTTTCAGGGTTTTGTTACCTGAAGAAGCCCTGCATAAGTGTCATACTTAAGTTGCAGAGACTATTTACTAGCGAGTTTTGAATGTTTGGTAATATGCTAATTGTTAGAACGGCATTCTGATATTACTTGCTTTCCTCTAGATTTTTATGTCGGTTTTGCGATATATTTTTCGTCGGTCAAGGAAGACATGGTTAGATTGGCCCTTTGTACCATTATAGCTATGTATTCGAATTTTGATTATGTTTAAACTAATTACCAATCTAATACATTCTCTGAAAATTTTGTTATGCTGTAAATTTTGCGAATGTAGTTATTCTTCTAAATTCTAATCGAGTATTATTGACAAGGACGGACAAA
>Glyma13g38830.1 sequence type=CDS gene model=Glyma13g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGATCAATGCTTGGTTGTGCACATCCCGGACAAGCAGCCGCATGACCTTCACCACCAACCCACTGAGAGTGTTTTTGCTTCAGCCATCGACCCTAAGCATGCCAACCAAATTGTAAGGCGTTTGAATCAGATAGCACCACTTGAAGATCTCCGTCATGTGAAACGAATTCAGAAGAAAGTTCTTGAAGGAGGACAAATAGAGCTATTGGTGATCTTGTGTCTGGCCCATGAAGGCAACAATCAACTGGATAATATGCCACCTCTTCTTCAGGAGTTGATCAGTTCCCATCAGTTGAGTCCTTTTATCACAAAAGTCTGCAAATACGCTGCAACATCAAAAGAAGAGTGGCAAGAGCAATGCAAATTTTGGCCAACATCATATCACCCCAGGACTTACAACATTGATGGCATTACTGGATTTAGCGAGGAGGACTCCCAATCAGTTTTGAAGTTTATGCAATCAGCTGTTGAGATGGCAACATCTGATGGCATGGTTGTTAATGCTGCAGTGATAGTGGATCCTTCAGCTAAGCAAATAATTTCAAGCGCATGTGATCAGATTTTTTCTTGGAACACTTGCAAAGACAACAACTGCTATAGAAAGCCAGAATTATCTAGTTCCCATCCTATAAGTTCCAGTAGATGTAATCCCCATGAACCATTGCATTCAAACAGTTCCTCCAATCAGCTTAAACAATCATATACAGACGTTGCTTGTTTATATCCTCGGCAATGGACTGAGCAGCAATCTCATTCACAGAGTTCATATTATTGGCACCCTTTGCGACATGCTGCCATTGTAGCTATAGAATCATCTGCTGCCAGGGATCGATACCTTTTTTCCAGTGAGGGAAACAGTGAAGATAGATATCTGGAATTGGATAGTGATAATTCTTCTTGGACTAGCTCTCCTGCAAAGAGACAGAAAACAGTGTGTGCAAATGGTGAGGATGATGATAGATTGAATGCTCATAGTCAGACTTCTGATCAGCCGCTGGCACGACCTTACTTATGCACTGGTTATGATATATATCTTGTTTGGGAACCATGCGCAATGTGTGCAATGGCCCTTGTCCATCAGAGAATTAGGCGAATATTTTATGCTTTTCCAAATCCTAATGCCGGTGCCTTGGGTAGTGTTCACAGATTACAAGGAGAGAAAAGCTTAAATCATCATTATGCTGTTTTCAGGGTTTTGTTACCTGAAGAAGCCCTGCATAAGTGTCATACTTAA >Glyma13g38830.2 sequence type=CDS gene model=Glyma13g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGATCAATGCTTGGTTGTGCACATCCCGGACAAGCAGCCGCATGACCTTCACCACCAACCCACTGAGAGTGTTTTTGCTTCAGCCATCGACCCTAAGCATGCCAACCAAATTGTAAGGCGTTTGAATCAGATAGCACCACTTGAAGATCTCCGTCATGTGAAACGAATTCAGAAGAAAGTTCTTGAAGGAGGACAAATAGAGCTATTGGTGATCTTGTGTCTGGCCCATGAAGGCAACAATCAACTGGATAATATGCCACCTCTTCTTCAGGAGTTGATCAGTTCCCATCAGTTGAGTCCTTTTATCACAAAAGTCTGCAAATACGCTGCAACATCAAAAGAAGAGTGGCAAGAGCAATGCAAATTTTGGCCAACATCATATCACCCCAGGACTTACAACATTGATGGCATTACTGGATTTAGCGAGGAGGACTCCCAATCAGTTTTGAAGTTTATGCAATCAGCTGTTGAGATGGCAACATCTGATGGCATGGTTGTTAATGCTGCAGTGATAGTGGATCCTTCAGCTAAGCAAATAATTTCAAGCGCATGTGATCAGATTTTTTCTTGGAACACTTGCAAAGACAACAACTGCTATAGAAAGCCAGAATTATCTAGTTCCCATCCTATAAGTTCCAGTAGATGTAATCCCCATGAACCATTGCATTCAAACAGTTCCTCCAATCAGCTTAAACAATCATATACAGACGTTGCTTGTTTATATCCTCGGCAATGGACTGAGCAGCAATCTCATTCACAGAGTTCATATTATTGGCACCCTTTGCGACATGCTGCCATTGTAGCTATAGAATCATCTGCTGCCAGGGATCGATACCTTTTTTCCAGTGAGGGAAACAGTGAAGATAGATATCTGGAATTGGATAGTGATAATTCTTCTTGGACTAGCTCTCCTGCAAAGAGACAGAAAACAGTGTGTGCAAATGGTGAGGATGATGATAGATTGAATGCTCATAGTCAGACTTCTGATCAGCCGCTGGCACGACCTTACTTATGCACTGGTTATGATATATATCTTGTTTGGGAACCATGCGCAATGTAA
>Glyma13g38830.1 sequence type=predicted peptide gene model=Glyma13g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMDQCLVVHIPDKQPHDLHHQPTESVFASAIDPKHANQIVRRLNQIAPLEDLRHVKRIQKKVLEGGQIELLVILCLAHEGNNQLDNMPPLLQELISSHQLSPFITKVCKYAATSKEEWQEQCKFWPTSYHPRTYNIDGITGFSEEDSQSVLKFMQSAVEMATSDGMVVNAAVIVDPSAKQIISSACDQIFSWNTCKDNNCYRKPELSSSHPISSSRCNPHEPLHSNSSSNQLKQSYTDVACLYPRQWTEQQSHSQSSYYWHPLRHAAIVAIESSAARDRYLFSSEGNSEDRYLELDSDNSSWTSSPAKRQKTVCANGEDDDRLNAHSQTSDQPLARPYLCTGYDIYLVWEPCAMCAMALVHQRIRRIFYAFPNPNAGALGSVHRLQGEKSLNHHYAVFRVLLPEEALHKCHT* >Glyma13g38830.2 sequence type=predicted peptide gene model=Glyma13g38830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMDQCLVVHIPDKQPHDLHHQPTESVFASAIDPKHANQIVRRLNQIAPLEDLRHVKRIQKKVLEGGQIELLVILCLAHEGNNQLDNMPPLLQELISSHQLSPFITKVCKYAATSKEEWQEQCKFWPTSYHPRTYNIDGITGFSEEDSQSVLKFMQSAVEMATSDGMVVNAAVIVDPSAKQIISSACDQIFSWNTCKDNNCYRKPELSSSHPISSSRCNPHEPLHSNSSSNQLKQSYTDVACLYPRQWTEQQSHSQSSYYWHPLRHAAIVAIESSAARDRYLFSSEGNSEDRYLELDSDNSSWTSSPAKRQKTVCANGEDDDRLNAHSQTSDQPLARPYLCTGYDIYLVWEPCAM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
