Glyma13g38810 - SoyBase

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Report for Sequence Feature Glyma13g38810

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39529212
stop:	39532321
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22070	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr5:7308255-7309343 FORWARD LENGTH=362	SoyBase	E_val: 1.00E-164	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_I1M482	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M482_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C581	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein n=2 Tax=Arabidopsis thaliana RepID=Q9C581_ARATH	SoyBase	E_val: 5.00E-162	ISS

Expression Patterns of Glyma13g38810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38810

Paralog	Evidence	Comments
Glyma12g31600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g311800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g38810

Limit To All Plant Sequences

>Glyma13g38810.2   sequence type=transcript   gene model=Glyma13g38810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCTTTGGTTTTTAATTTCTCCTGTAGGCTTTCCATTCCCCAGGAAACTCAATGTTCTCAAGCCCATTCGTGTTAACCTTCTCTCTCCTTCTCTCCCTCCCAATCCTCTTCTTCCTTGCCCCACGGATCCTCCCTCCAAAGCCCCATTCCTTCCCCCCCATCTCCCCCTCCGACGAGCTCGATGACATCAACCTCTTCAACCGCGCCATTTCCCATTCCAGCAATTCCCATTCCAACCCTTCCAAATTCTTCCACCTCTCCTCCAAAAACCCCTCTCTCAAAATCGCCTTCCTCTTCCTCACCAACACCGATCTCCACTTCTCCCCCTTATGGGACCTCTTCTTCTCTTCCTCCCCTTCCCACCTCTTCAACATTTACATCCACTCTGACCCCTCCTTCAACCTCACTCTCCCTCTTTCCCCTCTTTTCCGTAACAAATTCATCTCCTCCAAACCCACCTTCCGCTCCTCCCCTACCCTTATCTCCGCCACTCGCCGCCTCCTCGCCTCCGCTCTCCTCGACGACCCTTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCAAATACACCTACAACTCCCTCTTCCTCTCCCCAACCTTCGATTCCGAAAACCCCGAATCCTCGTCCCGCTTCGGCCTCCGCCTCAAATACAAATCCTTCGTCGAGATCCTCTCCCACGCGCCCAAGCTCTGGAGGCGCTACTCCTCCCGCGGACGCTACGCCATGATGCCGGAGATCCCCTTCGAAGATTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTCGTCGTCGTTAAGGACAGGACACTTTGGAGGAAATTCAAGATCCCGTGTTACCGTGACGATGAGTGTTACCCCGAGGAGCATTATTTTCCTACCCTGTTGTCCATGGCGGATCCTGATGGATGCACCAAATACACGCTCACGAGTGTTAACTGGACCGGCACCGTCAACGGCCATCCTTACACTTACCGGCCGACGGAAATCTCGCCGGAACTCATTCTCCGGCTCCGGAAGTCCAATCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCTAAATCGGTCATCTTCAGGGATTGAAATTCAAATTGTGGAAAAGGTCTGTGAAGAGATTTATGGTGTGAGATGATATTTTGCTTGCTGTTGCTGTGACTGTAGGTTGATGGTGGTGTATAGTTTGAAGAGGCACGAACAGCCCACATCCTATATGCATACCTGGAACTCTCAAATTGAGAGACTTGGGATCTTACACGAACGAGGGAATCAAATCAAATCATATACAAAGCAAAGAAATAGGTAAACACCTGCGTGAGTTGAAAAGGAAATGCGGGTGGTGCTCTAGGCAAGTGTATTTAGTTGGGATGCAAGTGCTAAAGTAATTGCTAATTTGGCATAGAAGATTGTGTAGGTAGTTCTTCCTTTTGTGGGATGGTTTTGTACATAAGAGTTGTGTAAACATTGTTTAAAAGCTCTACAGTGTTACTACTTTTGAACAAAAAAAAAAAAAGATTTGTCTAAACGTGAGGCAACAGTGACTGCAATTATAAAAAGGAAAAAAAAAACACTCTTTCCACATTTGGCTTTTTCGAATTGATCCCTTTGTCATCCTGCTATTGCTGTATCCACCTCCCGCTTACCTTTTTTCTTTTGTTCTTTTTGGGTCTTTGTATTAATTAGTCTACGATCCTTTTCTTCTGTGGAAAGTATCAGATGGTGCTTTAATTTCACTCCATTAGATATAAATATATAATAAAAGAAAATAAATAAATATTCTTGTAGAACTTGTGTGAGTAGTTATGGGATGAGTTGCTTGTTATGTTGAAAT

Coding sequences of Glyma13g38810

Limit To All Plant Sequences

>Glyma13g38810.1   sequence type=CDS   gene model=Glyma13g38810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCAAGCCCATTCGTGTTAACCTTCTCTCTCCTTCTCTCCCTCCCAATCCTCTTCTTCCTTGCCCCACGGATCCTCCCTCCAAAGCCCCATTCCTTCCCCCCCATCTCCCCCTCCGACGAGCTCGATGACATCAACCTCTTCAACCGCGCCATTTCCCATTCCAGCAATTCCCATTCCAACCCTTCCAAATTCTTCCACCTCTCCTCCAAAAACCCCTCTCTCAAAATCGCCTTCCTCTTCCTCACCAACACCGATCTCCACTTCTCCCCCTTATGGGACCTCTTCTTCTCTTCCTCCCCTTCCCACCTCTTCAACATTTACATCCACTCTGACCCCTCCTTCAACCTCACTCTCCCTCTTTCCCCTCTTTTCCGTAACAAATTCATCTCCTCCAAACCCACCTTCCGCTCCTCCCCTACCCTTATCTCCGCCACTCGCCGCCTCCTCGCCTCCGCTCTCCTCGACGACCCTTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCAAATACACCTACAACTCCCTCTTCCTCTCCCCAACCTTCGATTCCGAAAACCCCGAATCCTCGTCCCGCTTCGGCCTCCGCCTCAAATACAAATCCTTCGTCGAGATCCTCTCCCACGCGCCCAAGCTCTGGAGGCGCTACTCCTCCCGCGGACGCTACGCCATGATGCCGGAGATCCCCTTCGAAGATTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTCGTCGTCGTTAAGGACAGGACACTTTGGAGGAAATTCAAGATCCCGTGTTACCGTGACGATGAGTGTTACCCCGAGGAGCATTATTTTCCTACCCTGTTGTCCATGGCGGATCCTGATGGATGCACCAAATACACGCTCACGAGTGTTAACTGGACCGGCACCGTCAACGGCCATCCTTACACTTACCGGCCGACGGAAATCTCGCCGGAACTCATTCTCCGGCTCCGGAAGTCCAATCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCTAAATCGGTCATCTTCAGGGATTGA

>Glyma13g38810.2   sequence type=CDS   gene model=Glyma13g38810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCAAGCCCATTCGTGTTAACCTTCTCTCTCCTTCTCTCCCTCCCAATCCTCTTCTTCCTTGCCCCACGGATCCTCCCTCCAAAGCCCCATTCCTTCCCCCCCATCTCCCCCTCCGACGAGCTCGATGACATCAACCTCTTCAACCGCGCCATTTCCCATTCCAGCAATTCCCATTCCAACCCTTCCAAATTCTTCCACCTCTCCTCCAAAAACCCCTCTCTCAAAATCGCCTTCCTCTTCCTCACCAACACCGATCTCCACTTCTCCCCCTTATGGGACCTCTTCTTCTCTTCCTCCCCTTCCCACCTCTTCAACATTTACATCCACTCTGACCCCTCCTTCAACCTCACTCTCCCTCTTTCCCCTCTTTTCCGTAACAAATTCATCTCCTCCAAACCCACCTTCCGCTCCTCCCCTACCCTTATCTCCGCCACTCGCCGCCTCCTCGCCTCCGCTCTCCTCGACGACCCTTCCAACGCCTACTTCGCCCTCCTCTCCCAGCACTGCATCCCTCTCCACTCCTTCAAATACACCTACAACTCCCTCTTCCTCTCCCCAACCTTCGATTCCGAAAACCCCGAATCCTCGTCCCGCTTCGGCCTCCGCCTCAAATACAAATCCTTCGTCGAGATCCTCTCCCACGCGCCCAAGCTCTGGAGGCGCTACTCCTCCCGCGGACGCTACGCCATGATGCCGGAGATCCCCTTCGAAGATTTCCGCGTGGGCTCTCAGTTCTTCACGCTCACGCGCCGCCACGCGCTCGTCGTCGTTAAGGACAGGACACTTTGGAGGAAATTCAAGATCCCGTGTTACCGTGACGATGAGTGTTACCCCGAGGAGCATTATTTTCCTACCCTGTTGTCCATGGCGGATCCTGATGGATGCACCAAATACACGCTCACGAGTGTTAACTGGACCGGCACCGTCAACGGCCATCCTTACACTTACCGGCCGACGGAAATCTCGCCGGAACTCATTCTCCGGCTCCGGAAGTCCAATCATTCCGAGTCTTACCTCTTCGCCAGGAAATTCACCCCGGATTGCTTGGAGCCCTTGATGCGCATTGCTAAATCGGTCATCTTCAGGGATTGA

Predicted protein sequences of Glyma13g38810

Limit To All Plant Sequences

>Glyma13g38810.1   sequence type=predicted peptide   gene model=Glyma13g38810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSPFVLTFSLLLSLPILFFLAPRILPPKPHSFPPISPSDELDDINLFNRAISHSSNSHSNPSKFFHLSSKNPSLKIAFLFLTNTDLHFSPLWDLFFSSSPSHLFNIYIHSDPSFNLTLPLSPLFRNKFISSKPTFRSSPTLISATRRLLASALLDDPSNAYFALLSQHCIPLHSFKYTYNSLFLSPTFDSENPESSSRFGLRLKYKSFVEILSHAPKLWRRYSSRGRYAMMPEIPFEDFRVGSQFFTLTRRHALVVVKDRTLWRKFKIPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTSVNWTGTVNGHPYTYRPTEISPELILRLRKSNHSESYLFARKFTPDCLEPLMRIAKSVIFRD*

>Glyma13g38810.2   sequence type=predicted peptide   gene model=Glyma13g38810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSPFVLTFSLLLSLPILFFLAPRILPPKPHSFPPISPSDELDDINLFNRAISHSSNSHSNPSKFFHLSSKNPSLKIAFLFLTNTDLHFSPLWDLFFSSSPSHLFNIYIHSDPSFNLTLPLSPLFRNKFISSKPTFRSSPTLISATRRLLASALLDDPSNAYFALLSQHCIPLHSFKYTYNSLFLSPTFDSENPESSSRFGLRLKYKSFVEILSHAPKLWRRYSSRGRYAMMPEIPFEDFRVGSQFFTLTRRHALVVVKDRTLWRKFKIPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTSVNWTGTVNGHPYTYRPTEISPELILRLRKSNHSESYLFARKFTPDCLEPLMRIAKSVIFRD*

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