Glyma13g38800 - SoyBase

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Report for Sequence Feature Glyma13g38800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39521853
stop:	39528595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22190	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 5 \| chr3:7831280-7833512 REVERSE LENGTH=422	SoyBase	E_val: 6.00E-118	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF84	Panther	MYOSIN VIII	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_I1M480	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M480_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7LJM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ-DOMAIN 1-like isoform 3 n=1 Tax=Glycine max RepID=J7LJM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g38800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38800

Paralog	Evidence	Comments
Glyma12g31610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g311700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g38800

Limit To All Plant Sequences

>Glyma13g38800.2   sequence type=transcript   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAGACTACACCTGTCCTATGTCATTTGCTCCATCCTCGTGCCCCCCTCTCGTCGTTTTTAAACCAAATACTATTAGTTATTTAATATCATTAAGATATTAGTATATCTATTTCTCTTTCTCTGTCATACATAACCTTTTACAAGAGTTATTAAAATATTAAAATTTCATTCCACATTCATTCATTTCCTCATTACACATACTTATTTTTCTAGTTTTAGTTTTGCCGACTCGTCTCACATTCGTTATCTATTAGAGCGGCGAGCTTCACTTGGAAATCTTCTGAAGAGCTTCCGAGTTTGCGAATGAGAACTCGGCATTGACTCAGAGACGGTTCGTTACATTTTTGTGGCCGATGCTGAAGTTTTAGCTCAGTGACAATTTCTCTTGCTATGACTTTCAGGTTTATGCTATATTGAAATAAATTTTCATTGACTATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGTTGGCAAGTTTCACCATCAGAGAAGGCATGATGTCGAATTTAATAATGGTAAACTTCCAAACGAATTGGATAATGATGCTACTACACCTGTTGAAGATGTTAATGGCCATGCAAACCTTGATGCCCACTATTCATCTTCTTCTTCACAACAAGCACATGATGCTGCACATAATCAACAAATGAGGGAGGAATGGGCTGCAATACACATTCAAACAGCATTTAGAGGATTTCTGGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATAGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAGCTGAATGGAAGAAAGGATGCGAACATAAACACAAGGATATGTATTTTCGAGAATCTCAAATAAGGGAAATCACTCTCTTCTCTGTTGATATATGGGCATTTGTCGTTCTGTGCATATAATGTGAAGCGGTGAGGGCTTTGTATTGTACATAGTCCATGAAGAGTTGAAGACGATGAATGTGGTTTTACAGTTTTGAGATTGGCTTGGGTTGTGATAGGAATAAGATTTGCCTGGTTGATACAAGTTTGCTTTTATTTATGCAATGCAATGCTTGTTGTGGTCAGAATGTCAGTTATGTGATAGCATGATGCATTTATGTACACCTTTCAGTGTGATTGCCTTATGTCGCGTTATATTGTTGCCAGCTGTTCTTTAGTGAGCATATTTCACCAACACATACATGCTTCTGCGTAGATTTGATTATTTGATCATAATTGGTTATGCCTTATTTTCTGTACACTTTCACTCTGATTTTAGTACTATATTACCAATTGTTAAGGATATACAAACAAATAATGCCTGAAATTTGGGTTAAAATTGTTTAGAATAAAATCCCAGCAGTCATTATGAAAAGCAGATCCAGCA

>Glyma13g38800.3   sequence type=transcript   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAGACTACACCTGTCCTATGTCATTTGCTCCATCCTCGTGCCCCCCTCTCGTCGTTTTTAAACCAAATACTATTAGTTATTTAATATCATTAAGATATTAGTATATCTATTTCTCTTTCTCTGTCATACATAACCTTTTACAAGAGTTATTAAAATATTAAAATTTCATTCCACATTCATTCATTTCCTCATTACACATACTTATTTTTCTAGTTTTAGTTTTGCCGACTCGTCTCACATTCGTTATCTATTAGAGCGGCGAGCTTCACTTGGAAATCTTCTGAAGAGCTTCCGAGTTTGCGAATGAGAACTCGGCATTGACTCAGAGACGGTTCGTTACATTTTTGTGGCCGATGCTGAAGTTTTAGCTCAGTGACAATTTCTCTTGCTATGACTTTCAGGTTTATGCTATATTGAAATAAATTTTCATTGACTATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATAGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAGCTGAATGGAAGAAAGGATGCGAACATAAACACAAGGATATGTATTTTCGAGAATCTCAAATAAGGGAAATCACTCTCTTCTCTGTTGATATATGGGCATTTGTCGTTCTGTGCATATAATGTGAAGCGGTGAGGGCTTTGTATTGTACATAGTCCATGAAGAGTTGAAGACGATGAATGTGGTTTTACAGTTTTGAGATTGGCTTGGGTTGTGATAGGAATAAGATTTGCCTGGTTGATACAAGTTTGCTTTTATTTATGCAATGCAATGCTTGTTGTGGTCAGAATGTCAGTTATGTGATAGCATGATGCATTTATGTACACCTTTCAGTGTGATTGCCTTATGTCGCGTTATATTGTTGCCAGCTGTTCTTTAGTGAGCATATTTCACCAACACATACATGCTTCTGCGTAGATTTGATTATTTGATCATAATTGGTTATGCCTTATTTTCTGTACACTTTCACTCTGATTTTAGTACTATATTACCAATTGTTAAGGATATACAAACAAATAATGCCTGAAATTTGGGTTAAAATTGTTTAGAATAAAATCCCAGCAGTCATTATGAAAAGCAGATCCAGCA

Coding sequences of Glyma13g38800

Limit To All Plant Sequences

>Glyma13g38800.1   sequence type=CDS   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGTTGGCAAGTTTCACCATCAGAGAAGGCATGATGTCGAATTTAATAATGGTAAACTTCCAAACGAATTGGATAATGATGCTACTACACCTGTTGAAGATGTTAATGGCCATGCAAACCTTGATGCCCACTATTCATCTTCTTCTTCACAACAAGCACATGATGCTGCACATAATCAACAAATGAGGGAGGAATGGGCTGCAATACACATTCAAACAGCATTTAGAGGATTTCTGGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATACAGGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAG

>Glyma13g38800.2   sequence type=CDS   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGTTGGCAAGTTTCACCATCAGAGAAGGCATGATGTCGAATTTAATAATGGTAAACTTCCAAACGAATTGGATAATGATGCTACTACACCTGTTGAAGATGTTAATGGCCATGCAAACCTTGATGCCCACTATTCATCTTCTTCTTCACAACAAGCACATGATGCTGCACATAATCAACAAATGAGGGAGGAATGGGCTGCAATACACATTCAAACAGCATTTAGAGGATTTCTGGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATAGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAG

>Glyma13g38800.3   sequence type=CDS   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGAGAAGGATGGAAATGCCAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTAGTGAGGGTTCAAGCTCGTGTTCGAGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAATTATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCGGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAACCGCTTTGTTGACATAAATATGAAGGATGGAGTAACAGTACATGAAGATGGAACTAAGGATGATAAAAATGAAACCCCACCTCAGTTGAGCTCTGCTTACAAGAAACCATTCTCATCAAACACTCATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATTTCTGATGGCTGTGATTCTTCATCTAGTATGCCTGCAGGTTTGCCAGAATCATCAAACACACATCCTGTTAAGCCGACTTCTAAGGCAAATGCTGAAAATACTGTTGGAGAATTTAACTCAAAACCTAGAATTGGGTCAAGATCTCTTAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATAGGGCTGGTGCTGGATCTCAAATAGTCAAACACCCTGTTAGCATTACTAATGTGAAAGGGACGCTAAGCACGCAAAAGTCTACTAGGGATAAACCTAAGCTCAATGGAAGAAGGGAGGAGAATACAAAGTAG

Predicted protein sequences of Glyma13g38800

Limit To All Plant Sequences

>Glyma13g38800.1   sequence type=predicted peptide   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVSGKWIKALVGLKKSEKPEKDGNVGKFHHQRRHDVEFNNGKLPNELDNDATTPVEDVNGHANLDAHYSSSSSQQAHDAAHNQQMREEWAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKHQQNLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHEDGTKDDKNETPPQLSSAYKKPFSSNTHPNLTSQGTGPTISDGCDSSSSMPAGLPESSNTHPVKPTSKANAENTVGEFNSKPRIGSRSLSNPKERTSQADKQAKKRLSLPNNTGAGAGSQIVKHPVSITNVKGTLSTQKSTRDKPKLNGRREENTK*

>Glyma13g38800.2   sequence type=predicted peptide   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVSGKWIKALVGLKKSEKPEKDGNVGKFHHQRRHDVEFNNGKLPNELDNDATTPVEDVNGHANLDAHYSSSSSQQAHDAAHNQQMREEWAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKHQQNLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHEDGTKDDKNETPPQLSSAYKKPFSSNTHPNLTSQGTGPTISDGCDSSSSMPAGLPESSNTHPVKPTSKANAENTVGEFNSKPRIGSRSLSNPKERTSQADKQAKKRLSLPNNRAGAGSQIVKHPVSITNVKGTLSTQKSTRDKPKLNGRREENTK*

>Glyma13g38800.3   sequence type=predicted peptide   gene model=Glyma13g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVSGKWIKALVGLKKSEKPEKDGNARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKHQQNLANEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHEDGTKDDKNETPPQLSSAYKKPFSSNTHPNLTSQGTGPTISDGCDSSSSMPAGLPESSNTHPVKPTSKANAENTVGEFNSKPRIGSRSLSNPKERTSQADKQAKKRLSLPNNRAGAGSQIVKHPVSITNVKGTLSTQKSTRDKPKLNGRREENTK*

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