SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08465 | AT | Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein | chr1:2676033-2679382 FORWARD LENGTH=184 | SoyBase | E_val: 2.00E-78 | ISS |
| GO:0010158 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abaxial cell fate specification | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF04690 | PFAM | YABBY protein | JGI | ISS | |
| UniRef100_D9ZJG5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: YABBY domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJG5_MALDO | SoyBase | E_val: 3.00E-87 | ISS |
| UniRef100_I1M471 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M471_SOYBN | SoyBase | E_val: 4.00E-134 | ISS |
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Glyma13g38750 not represented in the dataset |
Glyma13g38750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g311200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38750.2 sequence type=transcript gene model=Glyma13g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATTTAAAGCATCGAGAATCCCAACATAGATGATGTATATACATCAAAGTTTGATTTGATCAGGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACATTGTGCCAATTTGCTGACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGTTACAGAGACAGCATCTCAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAAACATTTGAGACCGTAGACCATGATCAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGGGATGGTACTCAAAAGTCTAACGGATTTTACTGATTACATATATATAAACGGAAGTTTATCATTATCAACTGGTTTTTTCTGTGCTTGACCTAAATCAGTGAAAAATGAGGTTGATCAAATTTCCCAATCATACAACTGGATGGGAAGACTCCTGAAAATTGACCTCAGCATCTCACCCATCTTTAATATATATTATTATTATATGTATGTGTTGCCTTTTTCTAGTTGTTATGAAATGATTGCTATTCTTGTGATTGCATTAAATTACTATGTTGAACTTAGTCACTTAAGTAAGTAAACATTATTGTAAGTTTCCTTCTCTTTATAATGTGTCTTGCTATTTAGTATTTA
>Glyma13g38750.1 sequence type=CDS gene model=Glyma13g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACATTGTGCCAATTTGCTGACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGTTACAGAGACAGCATCTCAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAAACATTTGAGACCGTAGACCATGATCAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGGGATGGTACTCAAAAGTCTAACGGATTTTACTGA >Glyma13g38750.2 sequence type=CDS gene model=Glyma13g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGTTACAGAGACAGCATCTCAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAAACATTTGAGACCGTAGACCATGATCAGCAACCTAGGATTCCTCCTATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGGGATGGTACTCAAAAGTCTAACGGATTTTACTGA
>Glyma13g38750.1 sequence type=predicted peptide gene model=Glyma13g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSQDTTQLQRQHLSVQEACSKELGSSSKCKTFETVDHDQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY* >Glyma13g38750.2 sequence type=predicted peptide gene model=Glyma13g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGASLQTFPSQDTTQLQRQHLSVQEACSKELGSSSKCKTFETVDHDQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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