SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44050 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:15818738-15824792 FORWARD LENGTH=1263 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007018 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based movement | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG4280 | KOG | Kinesin-like protein | JGI | ISS | |
| PTHR24115 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24115:SF82 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00225 | PFAM | Kinesin motor domain | JGI | ISS | |
| UniRef100_G7IRI6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-like protein n=1 Tax=Medicago truncatula RepID=G7IRI6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BF3A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BF3A related cluster n=1 Tax=unknown RepID=UPI000233BF3A | SoyBase | E_val: 0 | ISS |
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Glyma13g38700 not represented in the dataset |
Glyma13g38700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g31730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g310700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38700.1 sequence type=CDS gene model=Glyma13g38700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGTTCCTATCGGAGGCTGCGAGTGCGATTAAGAGCAGGTTCGGGTTCCACGACCATCCCTCCGAATCGCTTTCGCTGGTTCAGAACACTCCGGATCTTTTCAAATCCGCCGTCAAAGACACTCTGTCGCAAAGCTCCATTGTCCGAAACCTAAGCGATTGGGACGATGAAACTGTGGTTGGACCAAGTAGCGCCGCCGTTTCCTCTTCTCAGAGCTTTGAATTCGCCGAGGACCCTTCCTTCTGGAAAGATCACAATGTACAGGTTATAATTAGAATGCGTCCTCTTAGCAACTCCGAAATATCGGTGCAAGGGTATGGAAAATGCGTTAGGCAAGAGAGTGGTCAGGCGATTACTTGGACTGGGCATCCCGAGTCGCGGTTTACTTTTGATCTTGTAGCTGACGAGAATGTTAGCCAGGAGAATCTCTTTAAAGTAGCTGGTTTGCCAATGGTAGAAAATTGCATGGGAGGCTACAACAGCTGCATGTTTGCTTATGGTCAAACTGGAAGTGGGAAGACACACACCATGCTTGGTGACATTGAGGGGGGAACTAGAAGACACAGTGTCAACTGTGGGATGACACCAAGAATTTTTGAGCACTTATTTACTAGAATTCAAAAGGAAAAAGAGGCTCGAAGAGATGAAAAGATAAAATTTACATGCAAATGCTCTTTCTTGGAGATATACAATGAACAGATCCTTGATCTTTTGGACCCATCATCTAACAATCTGCAGATAAGAGAAGACAGTAAGAAAGGAGTTTATGTGGAAAATCTTACGGAAACAGAAGTTACTTATGCTCGAGAAGTCATTCAATTACTTATTCAGGGAGCTGCGAACAGAAAGGTAGCTGCCACTAACATGAATCGTGCTAGCAGTCGTTCTCATAGTGTATTTACTTGCATCATTGAGAGTCAGTGGGAGTCTCAAGGAGTGACTCACTTTCGGTATGCTCGACTTAATCTTGTTGATTTGGCTGGATCTGAGAGACAGAAGAGTTCTGGTGCTGAAGGGGAACGCCTCAAGGAAGCCACTAATATCAACAAATCTCTTTCAACTTTAGGGCTGGTGATTATGAACCTAGTAAGCATATCTAATGGGAAGTCGCAACATGTTCCATACCGTGATTCAAAGCTTACATTTTTACTTCAGGACTCTCTTGGAGGGAATTCAAAAACAATCATAATTGCAAATATAAGCCCCTCCATTTGTTGTTCACTTGAAACATTAAGCACATTGAAGTTTGCACAACGCGCCAAATTTATTAAGAACAATGCAATTGTAAATGAGGATGCGTCCGGAGATGTCATTGCCATGAGAATTCAAATTCAACAACTTAAGAAAGAAGTATCCCGTTTGCGTGGTCTAGTTGGTGGAGGAGAAATTCAGGATAATGACATTTCAGTAGTCAGCTTCCCTGGTTCTCCTGGATCCTTCAAGTGGGAGGGTGTGCAAGGATCATTCAGTCCATTAACCTCTATTAAAAGGATATCTCAGAAAAAAGACTATGACGTTGCCCTTGTTGGGGCCTTTAGAAGGGCAAAAGACAAAGAGATGGAATTGCAAGCACTAAGAGATGAAATTGAAGCGTCCATGAAGCTGGTGAAACAAAGAGAAGATGAGATTCAGAGTTTGAAGATGAGACTACGTTTTCGAGAAGCTGGAATAAAAAGATTAGAAACAGTTGCTTCTGAGAAGATCTCAGCTGAGACACACTTGCTAAAAGAAAAAGAGGAGCACTTGAAGGAAATTGAGGTCTTGCGGGCCCAGGTGGATCGGAATAATGAAGCAACTAGATTTGCTATGGAAAATTTGCAGCTAAAAGAAGAAATTAGAAGGTTAAAGTCATTTTGTATGGAAGGTGAACGAGAACAGATGAATGAACAAATCATGGTATTGGAAAACAAGTTGTTGGAAGCACTAGATTGGAAATTTATGCATGAAACAGATCTGAAAATAAACTCTGATTCAATGATGGAAGATGTACATAATGATGGTAATCTCATCTCCAAACAGGAGTCAAGTCCAAAATCACATTGGCAGTCTTTGCTGAGGGAGGAAAATGAGTTTCTCAAGATTCAGGCTATACAAAACCAGGCAGAAATGGATACAATTCGCAAAAAGCTAGAGGTTTGCCTTGAAGAGAAAGAAAAATTAAAAAGGCATGTTGATGATTTGATGGAAAAATTTGAACAAGAGAAATGCCGAACAATTAATGAAGGAAAGGAGCAAATGGATCTTCCATCAACAACTGATATGCCTGTCATTAACAGCAATGACCAACTTGAATTGAAAGCAATGGTTGATGCTATAGCTTCTGCTAGTCAAAGAGAAGCAGAGGCTCACGAGACAGCAATTATGCTGGCAAAGGAGAATGATGAACTCAAGATGAAGCTTAAAGCCTTGATTGAGGATAATAGTAAACTAATTGAATTGTATGAACAAGCTGCTGCTGAGAAAAATAATAGAAATGTTAATAAAGGGGAGGGTGCTCAAGAAATTGGTTCTGAGATTGACAATGGTTGCTATTCTCTTGAAACAACAAAAGAGGAGACTGAGTTGAAAGGAGTGGTTGAGAATCTCCAGCATCAGTTAATGGAAATGAATGAAGAAAATGAAAAGCTGTTGAGTTTGTATGAAAGAGCCATGCAGGAGAAGGATGAAATAAAAAGAACTCTTGCATGTTTTGGACATGAAAGAGTTGAAACCAAAGGAGATATGGACTGCCCAGAGAAGCTTGTTGAAGTTGATGGTGGGGAAAGAGACTCGAGAGTACAAACTGTCTCTCAGGAAGTGCAGGGTAGAGATGAAAGTAAATGTGAATCTTCTACATCTGGATCTGATGTGGACTTCGAGTGTGATGCTCATGAACAGGAACATCTTTTAAAGGATGACAATGAGGCTGATATACTGGTCAACTCTGAGAAGAAATACGAGGTATCTGATCTCAGCGAAGCAGAGTTATCAGAGGAATTAAATTGTGCTACGAAGAAGCTTGAAAGAGTTGATGAACGTATCTCAGATGCAGTCAAGACTATAGCTTCACTTGGTTGTGCTGAAAAGGCAATGGTCCAGGTTGATGAGCTCTCTAGAGAAATTGAGGTCACAGAACATGATATTCAGGTCAAGCGTCGGCAGTTTGAATCCTTGAAACTTCAGTTTTCTGAAGCACAGGAAAGAAGAACAATAGTCAATAAAAAGTTCTCTGCACTCAAATATTCATTATCAAACTTCTCCTCAACATTTTCTTACTTTGAGCAACGGGAAGCAAGGGCAAGAGCAGTAGTGAATGACTTGACATCTCATCTTGCCCAAAACAAAGGTGAATTGGCTGCTCTTCAAGCTTCCAAACAGGGACTGGAGAATGCTCAAAAGAGGAACCAAGAATGTGAAGTTGAAATAATGAAAAATGTTGCATCCATCAAATCAAAATTGGAGGAGGAGAATCGCAAGTGCGAAGGTGAGAAGGTTCTATTTGCAGTTGAAAACACACAGAATATTGATTCCGCATTGAAAATTTTGCATCGTAGTTGTAAAGCCACCGAGTTACTTAAGTTAGAGGAAGATAAAACAAAACTGCAAGCAGAGATGAAGCTTTCTCAAGAAAAACTTGGTGTTATAAGAAAGGAACTGGGGAATCTAAAGAAGAAGGAGGCAAATGTAGAGAGCCAGATACAAGCTGTTCAACTGGAAGTAAAGAAACTTTTGAGGAACACAGAGGAGAAGGAGCTTGCACTTCAGCGTGTGATGAAAGAGAAAGAGATGCTCTTGGAGTTTAGAGATAATGGTATGTTGGAAATAGAGCATATGATCATTGAACTCCAGCAATATGTATTTGACTATGAGCTAAAGGAGGCTGAAATAAACATTCTTGGAGAAGAATTGCAAATAGATTTGATAAGAGCCGAAGAGTTACAAACAGCCAGGGTCATTGCTGCCAACAACAAGAACAATGTCCTTTCTTCTATTTCTTATTCTGGCATGTTTGGGAAGCTGAAGGAGGAGATGCAAAATCTGCGGGCATCAATTCTCGAAACAAAATTGTTGCTGGAAGGCATTTCCCATGCCAACTAA
>Glyma13g38700.1 sequence type=predicted peptide gene model=Glyma13g38700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFLSEAASAIKSRFGFHDHPSESLSLVQNTPDLFKSAVKDTLSQSSIVRNLSDWDDETVVGPSSAAVSSSQSFEFAEDPSFWKDHNVQVIIRMRPLSNSEISVQGYGKCVRQESGQAITWTGHPESRFTFDLVADENVSQENLFKVAGLPMVENCMGGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRIFEHLFTRIQKEKEARRDEKIKFTCKCSFLEIYNEQILDLLDPSSNNLQIREDSKKGVYVENLTETEVTYAREVIQLLIQGAANRKVAATNMNRASSRSHSVFTCIIESQWESQGVTHFRYARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNGKSQHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSICCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRIQIQQLKKEVSRLRGLVGGGEIQDNDISVVSFPGSPGSFKWEGVQGSFSPLTSIKRISQKKDYDVALVGAFRRAKDKEMELQALRDEIEASMKLVKQREDEIQSLKMRLRFREAGIKRLETVASEKISAETHLLKEKEEHLKEIEVLRAQVDRNNEATRFAMENLQLKEEIRRLKSFCMEGEREQMNEQIMVLENKLLEALDWKFMHETDLKINSDSMMEDVHNDGNLISKQESSPKSHWQSLLREENEFLKIQAIQNQAEMDTIRKKLEVCLEEKEKLKRHVDDLMEKFEQEKCRTINEGKEQMDLPSTTDMPVINSNDQLELKAMVDAIASASQREAEAHETAIMLAKENDELKMKLKALIEDNSKLIELYEQAAAEKNNRNVNKGEGAQEIGSEIDNGCYSLETTKEETELKGVVENLQHQLMEMNEENEKLLSLYERAMQEKDEIKRTLACFGHERVETKGDMDCPEKLVEVDGGERDSRVQTVSQEVQGRDESKCESSTSGSDVDFECDAHEQEHLLKDDNEADILVNSEKKYEVSDLSEAELSEELNCATKKLERVDERISDAVKTIASLGCAEKAMVQVDELSREIEVTEHDIQVKRRQFESLKLQFSEAQERRTIVNKKFSALKYSLSNFSSTFSYFEQREARARAVVNDLTSHLAQNKGELAALQASKQGLENAQKRNQECEVEIMKNVASIKSKLEEENRKCEGEKVLFAVENTQNIDSALKILHRSCKATELLKLEEDKTKLQAEMKLSQEKLGVIRKELGNLKKKEANVESQIQAVQLEVKKLLRNTEEKELALQRVMKEKEMLLEFRDNGMLEIEHMIIELQQYVFDYELKEAEINILGEELQIDLIRAEELQTARVIAANNKNNVLSSISYSGMFGKLKEEMQNLRASILETKLLLEGISHAN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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