Glyma13g38690 - SoyBase

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Report for Sequence Feature Glyma13g38690

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39424408
stop:	39429303
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46230	AT	Annotation by Michelle Graham. TAIR10: PIN domain-like family protein \| chr2:18984459-18985850 REVERSE LENGTH=196	SoyBase	E_val: 1.00E-116	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3165	KOG	Predicted nucleic-acid-binding protein, contains PIN domain	JGI		ISS
PTHR12416	Panther	UNCHARACTERIZED	JGI		ISS
PF04900	PFAM	Fcf1	JGI		ISS
UniRef100_G7KNI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: rRNA-processing protein FCF1-like protein n=2 Tax=Medicago truncatula RepID=G7KNI1_MEDTR	SoyBase	E_val: 6.00E-132	ISS
UniRef100_I1LU28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LU28_SOYBN	SoyBase	E_val: 4.00E-143	ISS

Expression Patterns of Glyma13g38690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g38690 not represented in the dataset	Glyma13g38690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38690

Paralog	Evidence	Comments
Glyma12g31740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g310600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g38690

Limit To All Plant Sequences

>Glyma13g38690.4   sequence type=transcript   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATATAATTATTTTATTTTCTCACGTCTCACTTGCTGTCTTTCATATTTTTCCCTAGTAATTTTCCCCTTGTGCGGCTATTCCACCCCACGACGAACCTGCGCATCTCTCTCTCTCTCGCGCGCGCCGCTTTTCTCTCAGCCAGCCCTGCAGGTACTCCTCCGTCTGCTCTCAGCCCCAAACGGCTCTTCTTGTTTTCTCTGCTCCCAAGGGTTTTGCATAATTTAGCTCTTTTTCTCCGCCCACAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAGTTACCCAGAAATGTTCCAACTCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAATTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAGATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACAATAATATTGATACTAATTTCTTGGTCGTGAAGTATGAAATCCTGCTACAGTACCTAGCATATTCGGTCTTTTGCTGGCTGGGCTGAATTCTATCGGAAGCTTGAGACTTGAACAAAAGCAGCACTTCAATGGTTTATACCTGAAATTTTCTTAGTGTAAGTTGGTAGATTTAGGTTCTGTCAAATTTTGTTTTCCTCATATTGCCTATCTAATGTATCATGGTAAACCTTGGAGAGTGTCTGAACTATGATGACATTTTCATAGTTCTGGGCTTGTGGCAATTAACTCTCTTGAAACGATACTTTTTTTGTTGCAAGAGAAAAACCTTATTTTCCTTGAATCTAAATTTTATTAGTTTCAAGCTTGACATGCCAGAAGACTGAGTTGGAAACTGGAAATTTCAAAACCACTGTTTTTCTTCTTTAAAGGCCAGTGGAGTACCAAAAGAATTTGTGTTTCAATTAGTGTACGTATTTTATTATAAAAATATATTTCATATTATTAGATGTAAATTATACCCAACAGCTCATTTGATTAAACTTGTTTGCTCAAACAGTTAATCCGGTTGAACATAAAGACTAAAGAGGATGTTTAACCAATGTTGTACCATCTAATTATCATTGCCCAGAAGAAAATTCAAGCTATTTTGCGTATTAGTTTAACGTTTCACGCTCCAGAAGGTTTAACAATTATTTTGCCTATATTTCCGTATTATGTGATCTGAATGCTGCATCTTGGGGTGTCTTGAATTGTAGAAAGATGACGTTTCTACTATCTAGTGATGCGACTTAAGTGGAGTCTCAACTCTCAACTCAAGCAAGCAAATTACCAGTGTAAATTTTAAAAATCTACGTGTGCGTTGGACTTATATAAATGTAAGT

>Glyma13g38690.5   sequence type=transcript   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATATAATTATTTTATTTTCTCACGTCTCACTTGCTGTCTTTCATATTTTTCCCTAGTAATTTTCCCCTTGTGCGGCTATTCCACCCCACGACGAACCTGCGCATCTCTCTCTCTCTCGCGCGCGCCGCTTTTCTCTCAGCCAGCCCTGCAGGGTTTTGCATAATTTAGCTCTTTTTCTCCGCCCACAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAGTTACCCAGAAATGTTCCAACTCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAATTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAGATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACAATAATATTGATACTAATTTCTTGGTCGTGAAGTATGAAATCCTGCTACAGTACCTAGCATATTCGGTCTTTTGCTGGCTGGGCTGAATTCTATCGGAAGCTTGAGACTTGAACAAAAGCAGCACTTCAATGGTTTATACCTGAAATTTTCTTAGTGTAAGTTGGTAGATTTAGGTTCTGTCAAATTTTGTTTTCCTCATATTGCCTATCTAATGTATCATGGTAAACCTTGGAGAGTGTCTGAACTATGATGACATTTTCATAGTTCTGGGCTTGTGGCAATTAACTCTCTTGAAACGATACTTTTTTTGTTGCAAGAGAAAAACCTTATTTTCCTTGAATCTAAATTTTATTAGTTTCAAGCTTGACATGCCAGAAGACTGAGTTGGAAACTGGAAATTTCAAAACCACTGTTTTTCTTCTTTAAAGGCCAGTGGAGTACCAAAAGAATTTGTGTTTCAATTAGTGTACGTATTTTATTATAAAAATATATTTCATATTATTAGATGTAAATTATACCCAACAGCTCATTTGATTAAACTTGTTTGCTCAAACAGTTAATCCGGTTGAACATAAAGACTAAAGAGGATGTTTAACCAATGTTGTACCATCTAATTATCATTGCCCAGAAGAAAATTCAAGCTATTTTGCGTATTAGTTTAACGTTTCACGCTCCAGAAGGTTTAACAATTATTTTGCCTATATTTCCGTATTATGTGATCTGAATGCTGCATCTTGGGGTGTCTTGAATTGTAGAAAGATGACGTTTCTACTATCTAGTGATGCGACTTAAGTGGAGTCTCAACTCTCAACTCAAGCAAGCAAATTACCAGTGTAAATTTTAAAAATCTACGTGTGCGTTGGACTTATATAAATGTAAGT

Coding sequences of Glyma13g38690

Limit To All Plant Sequences

>Glyma13g38690.1   sequence type=CDS   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAGTTACCCAGAAATGTTCCAACTCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAATTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAGATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGAATTTGA

>Glyma13g38690.4   sequence type=CDS   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAGTTACCCAGAAATGTTCCAACTCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAATTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAGATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGAATTTGA

>Glyma13g38690.5   sequence type=CDS   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAGTTACCCAGAAATGTTCCAACTCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAATTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCACAAGTGCTACATTGTTGCAACATGTGATCGGGACTTGAAGAGGAGAATTCGGAAGATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGCTCCAAGAATTTGA

Predicted protein sequences of Glyma13g38690

Limit To All Plant Sequences

>Glyma13g38690.1   sequence type=predicted peptide   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAKKGPKFAVMKKIVTSKAIKSYKEEVLNPEKKNLMKEKLPRNVPTHSSALFFQYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKRKYSIERLPEATIGGAPRI*

>Glyma13g38690.4   sequence type=predicted peptide   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAKKGPKFAVMKKIVTSKAIKSYKEEVLNPEKKNLMKEKLPRNVPTHSSALFFQYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKRKYSIERLPEATIGGAPRI*

>Glyma13g38690.5   sequence type=predicted peptide   gene model=Glyma13g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAKKGPKFAVMKKIVTSKAIKSYKEEVLNPEKKNLMKEKLPRNVPTHSSALFFQYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKRKYSIERLPEATIGGAPRI*

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