SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05120 | AT | Annotation by Michelle Graham. TAIR10: Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1002 | KOG | Nucleotide excision repair protein RAD16 | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF62 | Panther | SWI2/SNF2-LIKE PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_G7JEP7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD5 n=1 Tax=Medicago truncatula RepID=G7JEP7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C05F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C05F related cluster n=1 Tax=unknown RepID=UPI000233C05F | SoyBase | E_val: 0 | ISS |
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Glyma13g38580 not represented in the dataset |
Glyma13g38580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g31910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g309700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38580.2 sequence type=CDS gene model=Glyma13g38580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTTCGTTCTCGTCGACGCCTCTCCAATCCTTCAGTTTCCGGGAAGGAGCAACCACCTGGGGATGATGCTGTTGGGGAAGATGAAACTACTACTGGCAAGGGCAGTAACAATAAAGATAAAGGTGTTGCTGTTATATCATCAAATTCAGATATAGTTTCTGGTCCTGATTCAGATTCTGATTACGAAGATGAAGAATTTGGTGTTGGCTCCTTACCTGACTTGAATCAAGATCCTTCAAGCATTAGTTTTTCTAGTGGAGAAGATTATGCTTCCGATTCATCTGATGGTGGCAAGTCTTTGTACAAAAGAGGAAAGGCGCTGCTGTCCAGAGGGAAAAGAAAAAGTTTCAACACTGAATATGGAGAACCGAGTGACGTGGTTAGAGTAGCGGAGTACAAAGATGATGATGCTCAATTTGCAATCTTTCAGGAACTATCAGTTCCGTCTGTTTCTAAGGGTACTAAGAGGAGGAAATATTCAAGAAAAGGAAGAAAAGGAGATTCAAAGTCTGTGTTGTTGTGGAATGCGTGGGAAGAGGAGCAAGAGAAATGGATTGATAGGCATATGTTAGAAGATGTTGACTTGGATAATCATAGTGAGGTAATGAATGAAACTGCTGACATACCCTCTGATCTGACAATGCCTTTACTTAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAGTTCTGCAAGTAAAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTGTTCAAGCAATTGCTCTTGTCCTCGCCAAACGTGAATTTGAACTAGGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGCCTGAAGCCTGCGATCAAAGGAACGCTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGGTTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGATTTATCATGGGGCAAATAGAGGGAGGAGTGGGAATCGGTTTGCAGATTATGATTTTGTGATAACTACGTACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGTTGCCTCCAAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCGAATAAGTTGATGTATCATCAGATTTATTTTTGTGGTCCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAGAGAAGTTACCAAGGGGAAGACCAAGAAATCTGACAGTAAGATATCAAAGAGTTCTAACACGAAAAAGGAAGAGGAAATGTGGATGGATGAAGAAGATTTAGATGCACCTGTGCGTAGCGATAGGTCAATTCTTCATGCTGTGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCTAAAGCAGTTCTTGCTTTAGAGTCTACCTACAAATGGGCGCTAAGTGGCACCCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCACTAAAGAATGTTCAGTTTGCACCCACAGTTCTGTGCGGCATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTATGGAAATGGGGATGCTGGGAAAAGAGCCATGATATTGCTCAAACACAAAGTTTTGAAGAACATAGTATTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCTTGGATATTAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGTCAGGCACAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGTCAGGCAGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTGCAGCATCAAGAAGTGGAGTTCTGTCTAATAATGTTACTGTTGAACAAGTTTGTGGCATTTGCCATGAGCCAGTTGAAGATGTTGTGGTTACCTCCTGTGAACATGCATTTTGCAAGGCATGCTTGATAGACTTCTCTTCTTCCTTGGGACGAGTTTCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACATCCAACAAGGATGTTGGGGATCAGGCTAATAAAACAACAATTAAGGGTTTTAGATCCTCAAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTCTGAGGGAAGAAATAAGATTCATGGTTGAAAGGGACGGCTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCCTGGATCTTATAAACTACTCTTTGCACAAGTCTGGAGTTTCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAGCCTATAAGAATTGTGAGGTTTGTCATTGAAAACACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTTGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA
>Glyma13g38580.2 sequence type=predicted peptide gene model=Glyma13g38580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELRSRRRLSNPSVSGKEQPPGDDAVGEDETTTGKGSNNKDKGVAVISSNSDIVSGPDSDSDYEDEEFGVGSLPDLNQDPSSISFSSGEDYASDSSDGGKSLYKRGKALLSRGKRKSFNTEYGEPSDVVRVAEYKDDDAQFAIFQELSVPSVSKGTKRRKYSRKGRKGDSKSVLLWNAWEEEQEKWIDRHMLEDVDLDNHSEVMNETADIPSDLTMPLLRYQKEWLAWALKQESSASKGGILADEMGMGKTVQAIALVLAKREFELGCEPDQSIPCSSSLKPAIKGTLVICPVVAVTQWVSEVDRFTLKGSTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMLPPKERCPYCGKLFLPNKLMYHQIYFCGPDAVRTEKQSKQAKKKKREVTKGKTKKSDSKISKSSNTKKEEEMWMDEEDLDAPVRSDRSILHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSTKECSVCTHSSVRHFCWWNKYVATPIQSYGNGDAGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSGVLSNNVTVEQVCGICHEPVEDVVVTSCEHAFCKACLIDFSSSLGRVSCPTCSKLLTVDLTSNKDVGDQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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