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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11790 | AT | Annotation by Michelle Graham. TAIR10: arogenate dehydratase 1 | chr1:3981476-3984562 FORWARD LENGTH=341 | SoyBase | E_val: 3.00E-69 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-phenylalanine biosynthetic process | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004664 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prephenate dehydratase activity | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| GO:0047769 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: arogenate dehydratase activity | SoyBase | N/A | ISS |
| PTHR21022 | Panther | PREPHENATE DEHYDRATASE (P PROTEIN) | JGI | ISS | |
| PF00800 | PFAM | Prephenate dehydratase | JGI | ISS | |
| UniRef100_A2Q4I2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydratase/prephenate dehydratase n=2 Tax=Medicago truncatula RepID=A2Q4I2_MEDTR | SoyBase | E_val: 2.00E-109 | ISS |
| UniRef100_UPI000233C05D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C05D related cluster n=1 Tax=unknown RepID=UPI000233C05D | SoyBase | E_val: 4.00E-144 | ISS |
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Glyma13g38531 not represented in the dataset |
Glyma13g38531 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g31940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g309300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38531.2 sequence type=transcript gene model=Glyma13g38531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAACAAGTGAAGTGTCCCTCAAAACCAGCATAGTTAGTTTTGTACTTTTGGTCCAAGCGGTTGCTTTTGGTCTTTCTTGCACTTCACATTTTTTTTTTTGTAATGGTTTTGGGTGTGAGAGTGAGAGAGCACACTTCAACTATTGAGAACCGTTGACCTCCATGGCTGTGACAGTAGGTGGACTCGCAAGTTCTCAACTTTGGTGTCACAATTTGAGAATCAGACACAGTGCTCTTACACTGAGTTGGGGAAAAAAAGCAGCTGACGAGAGCACAGAAATGTGGTGGGGACGAGAATCCATGGAAGGCAGTGAAGATAGTGATGCGTGTGGTTGATCATCCTCAAATGGATGATTATGTCTCCCGTGGAGTGCATAAGGATTCGGTCTCCCTTCCAAAGCCATTATCCATATCTGATATTGTGGCTGCTTTGGATGATGGTGCTAAAGTACAGATATCATATAAGGGGATACCAGGATCATACAGCGAGGATGCTGCACTCAAAGCTTACCCTAATTGTGAAACAGTTTCATGCAATGACTTTGAAGAAGCTTTTAAGGCAGTTGAGATATGGTGGGCTGACAAAGTTATCCTTCCAATAGAAAATACATCTGGGGGAAGCATTCAACGGAACTATGATTTACTTCTTTGCCATAGGCTTCACATTGTTGGTGAGGTGCAGTTGGCTACTAACCTCTCCCTTCTAGCTCTGCCTGGCATCAGAACTGAGTACCTAAAACGGGTTCTAAGTCATTCTCAGGCATTTGAATTGAGTGATGATTTCCTGACTAAATTAGGTGTTGCCAGAGAAAACGTTGATGACACAGCTGGTGCTGCTCAGATTATAGCTTCAAATGGTCTGTATGATGCCGGTGCGATTGCCAGCATTCGAGCTGCGGAAATCTGCGGGCTTAATGTACTTGCAGAATGAATTCAAGTAAAATCCCTTACGAATCATTATTTGCAAGAAATTGTCAATTAACTTGTTACTCACTACCCTTGATTTGATTGTCAACAAGTATGCATTTGAGAGCTTAGTGTGTACATGTTATGTTACTTTGAAAGCAAAGAAACTAGGCTGGTACCAGAGATTTGCAAATAAGAATTTTAGCTTTTTGGTGCAATCGGTGATAATTATAAAGCAGTTGTTATCATGTTTAACAGTATAAATATAGTAAATATGGGAAATTCTAGGAGCTCCCAGAGCATGAAAATCTCTTGCTATGTACCATCTTGTACTGCCTCATTTATAACTTAAAAATGTAGTTAAAGTAGGAGAAGTGATGGTCATATAGCTGAGTAACATTCTATAAGACAAAGCTACGAATTTCTCACAAAGTATTAGGGAAACTATCAGGAAATAAGCGTTGACCCTGAATTCAAGAGTGATATTGCATATACTCTTTCTTCTAGTGTAAATATAGTTGTTGACTAGAGGCAATATGTGCTTCAACCTATGGCTTTTCTACATTGTCTCCTTCTCTACCTTTCCTACAGATAATTCAGACTCTTTATTTTCTCTAATTTTTCAACATGTAGAAGAACAATTCCCCTAAATGTTATGCTGTTAGGAGGAACCCCAAGAATGACTTTTGTCTCTAACAGTAATAGATGCAAGACAGAAATATCTTAAATTTCCATGATTGTGGTATTTACTATTTAGCTTAGACCTCACTTGTTCTTTAGACGTTCAGAACATTCTTTCTAAGGCTATCTAACATTCCTTATTCTCTCTCTTTCTCATTTGCTTCCCTTCTGTCCAGGAATAATGTGGATGATGGGATGCTTAAATCCACTTTTGAATATCTGCCAACTGATCCCATTTCTAACCTTTTATTTATAATCAATGGTTCCCACTAATATGCTCTTTAAACCCTTGATTTTTTTATTTTTTTACTGATGAGCTACATCAATATACTCTTATGGTGTATAAATTTCTCTTGAAGTTGATTTTTTTTTTCAAAAATGGGTTTAAATTAATAAGGTGAAAATATTTACTAAAAAGTGACATGAATCAACTGCAATGCATTTGCATTGAGAGACATAAATTTAACCAAGGTTATCTGTGGAAAAACTTCTTTTTTTTTCTTGTTAGTCTAGCCCTATATATGATGATTAGGTGAAAAGTAACAATATGCATTTTGAAATCAGATTGAAAGCCGACCACAAAGAAATCGGCCATTAAGAGTTGTTGATGACTCAAACACTCCAACTGCCAAGTGAGTTAGCTTTTTGCCTTTTCCCAACGGAGCACCACAATTGGCCATTGTCCTTCATACCTTGTCTTTTTCATGCTAGTTTGTCTTTAATTGCTACTTGCTGCAGTGTTCAGACATGTTTAATTCAATCCCAAAAGGTAACTCAAGATTCTTACAAGCCAATGTAGGTTTAACTCAATCCCAAAAGGTAACTCAAGAGGTGAGGGTTGCCCCTCACTTATATATTCTAATTTGGCTTTATTTTTAGCTGATGTGGGACTTGGGTTTTTCCCAACACAAACATTAAATTAACCTGTAGTATTTTTTGATTTAGGTATTTCGATTACCTTTTCTATATTGATTTTGAGGCGTCTATGACTGAACCCCGAGCACAAACTGCCTTAGGACATCTTCAGGTTTGACTTCTTAATTTTTTTATTTTATGATTTGAATTATGTATTTTGATTCTTCTCTTATTTTATCTCCTCCTAAACTTTTACAATAACCCATGGAAAAATAGTAGAAAATTTTGTTCAGTTGTTTTAGGAGTCCAGCAAGCCTGTGCAGAGTAGTCCTCTCATATTTTTAGATTCTAGCATGCTAACTTAATAAAAATTTGCCAACAATTAATATCAAGGAGAGCAAGCTTTGGTTTGGACTTCTACTGTGCTCAAGAGTTTTCATTCTTGAGTTTTATGTCCTTGATTTGGATGCTTGAGTATGTTATCACAGCTCAATTTAACCCCTCTGCATCTCCTTAACCACATCATTGTTGGTATAGCATATGATAAAATGGGACAAATTTGCATACAAAAATAGCAATGACAATTGGCAGAAGCACTTCCTGCAAGCCATGAATGGTGCTGTTCCAAAAGTTTCTGAGGTTTGTCTCCAATGGTGCTGTTCTATTAGGGTCCAATCACTATTTAACTCAATATTTTTCATTACTACAACAAATACTAATCTAAAATGCATATAACTCTAGGAAACTTTCTTCCTCAAATTTTCTGTGCGGTGCAGTAACTTTTTCCTTTTTGGGCAGCTGTAATAATATAATTAATTAACCCTTCAACTTTCATGTCATGAGTATCTAACCACATACCAAAAACCATTTTATGTCCCTACAGGAATTTGCCACATTTCTTCGGGTATGGTAAAAAATGTAATTTACATTACACAATAGTTAGTTAGCCTTTTATTCATTTTGTTAGTCAGTTTTATAGATTGACACGTGTGCTATACTACCTGTCTTAATAAGAATTTAAATAGAGACTTGTATTGTAATTTTTCATTCAATCAATATTCAGAACTTTATCCTCTCTTCGTTTCTTGAATAGTTTGAATTTATGCTAACAATAGTTGATCTTGACCTTTAGACAGTGCCATTAGTTCATCTAAACTTCAATTCATCAAACGAAGTTTGATGGCCATTGAAGAAGATATTCATGAAGGATAACAATTAACAAGGTATGAGGTTTTAGCCAAATATGTAGTTCTGAGCTTTCTTTCTATTAAATTGTCAAACCTGGCAAAAAAACGAAAAGAATCGGCTAATGTATTCTGTCACTGTATCGTAATCATTAAGAACATGTTTGGTTCGCATCTCATGTCTTGATTTTTATCATCTTCCACCCACCAAGTTAATTAGTTATATTCAGTGGTGGATCTATATGGAGGATAATAATAGGGGTAATTGTTTCCAC
>Glyma13g38531.1 sequence type=CDS gene model=Glyma13g38531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGTGGTTGATCATCCTCAAATGGATGATTATGTCTCCCGTGGAGTGCATAAGGATTCGGTCTCCCTTCCAAAGCCATTATCCATATCTGATATTGTGGCTGCTTTGGATGATGGTGCTAAAGTACAGATATCATATAAGGGGATACCAGGATCATACAGCGAGGATGCTGCACTCAAAGCTTACCCTAATTGTGAAACAGTTTCATGCAATGACTTTGAAGAAGCTTTTAAGGCAGTTGAGATATGGTGGGCTGACAAAGTTATCCTTCCAATAGAAAATACATCTGGGGGAAGCATTCAACGGAACTATGATTTACTTCTTTGCCATAGGCTTCACATTGTTGGTGAGGTGCAGTTGGCTACTAACCTCTCCCTTCTAGCTCTGCCTGGCATCAGAACTGAGTACCTAAAACGGGTTCTAAGTCATTCTCAGGCATTTGAATTGAGTGATGATTTCCTGACTAAATTAGGTGTTGCCAGAGAAAACGTTGATGACACAGCTGGTGCTGCTCAGATTATAGCTTCAAATGGTCTGTATGATGCCGGTGCGATTGCCAGCATTCGAGCTGCGGAAATCTGCGGGCTTAATGTACTTGCAGAATGA >Glyma13g38531.2 sequence type=CDS gene model=Glyma13g38531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGTGGTTGATCATCCTCAAATGGATGATTATGTCTCCCGTGGAGTGCATAAGGATTCGGTCTCCCTTCCAAAGCCATTATCCATATCTGATATTGTGGCTGCTTTGGATGATGGTGCTAAAGTACAGATATCATATAAGGGGATACCAGGATCATACAGCGAGGATGCTGCACTCAAAGCTTACCCTAATTGTGAAACAGTTTCATGCAATGACTTTGAAGAAGCTTTTAAGGCAGTTGAGATATGGTGGGCTGACAAAGTTATCCTTCCAATAGAAAATACATCTGGGGGAAGCATTCAACGGAACTATGATTTACTTCTTTGCCATAGGCTTCACATTGTTGGTGAGGTGCAGTTGGCTACTAACCTCTCCCTTCTAGCTCTGCCTGGCATCAGAACTGAGTACCTAAAACGGGTTCTAAGTCATTCTCAGGCATTTGAATTGAGTGATGATTTCCTGACTAAATTAGGTGTTGCCAGAGAAAACGTTGATGACACAGCTGGTGCTGCTCAGATTATAGCTTCAAATGGTCTGTATGATGCCGGTGCGATTGCCAGCATTCGAGCTGCGGAAATCTGCGGGCTTAATGTACTTGCAGAATGA
>Glyma13g38531.1 sequence type=predicted peptide gene model=Glyma13g38531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVVDHPQMDDYVSRGVHKDSVSLPKPLSISDIVAALDDGAKVQISYKGIPGSYSEDAALKAYPNCETVSCNDFEEAFKAVEIWWADKVILPIENTSGGSIQRNYDLLLCHRLHIVGEVQLATNLSLLALPGIRTEYLKRVLSHSQAFELSDDFLTKLGVARENVDDTAGAAQIIASNGLYDAGAIASIRAAEICGLNVLAE* >Glyma13g38531.2 sequence type=predicted peptide gene model=Glyma13g38531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVVDHPQMDDYVSRGVHKDSVSLPKPLSISDIVAALDDGAKVQISYKGIPGSYSEDAALKAYPNCETVSCNDFEEAFKAVEIWWADKVILPIENTSGGSIQRNYDLLLCHRLHIVGEVQLATNLSLLALPGIRTEYLKRVLSHSQAFELSDDFLTKLGVARENVDDTAGAAQIIASNGLYDAGAIASIRAAEICGLNVLAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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