Glyma13g38410 - SoyBase

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Report for Sequence Feature Glyma13g38410

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39169282
stop:	39170576
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21710	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr3:7648380-7649533 FORWARD LENGTH=211	SoyBase	E_val: 9.00E-19	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SYG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYG9_SOYBN	SoyBase	E_val: 3.00E-128	ISS

Expression Patterns of Glyma13g38410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g38410 not represented in the dataset	Glyma13g38410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38410

Paralog	Evidence	Comments
Glyma12g32070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g308000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g38410

Limit To All Plant Sequences

>Glyma13g38410.2   sequence type=transcript   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCTAAAACCGATTCTCGAACACTTCTTTAGATGTTTATACTTGGAGAGAGATTAGATTAATTGGGACCATGATTATCTCATACCACTGTATAATTTCTGCGTAGGAGGAGAGAAAAGATAAAATGAAGGGAGGTGTTTGCTAATATTAAATATCCTAAAATCATGACTCATTATCATTCATTCCTCCCTATTTTTGTCTCTCTCTCATGGTGTAGGTGTGTAGCAGACATTTAGTATCCATACAAAATTATTCTAAACTCATAGTGTTATAAATCCCTCGAGAGAGAGGAAGTCTCTCAACCTCTGACAAACAAAACACACAAACACTCTTTCCTGATGGAGCATTCTCTGAATCCTTCTATGGGAAAAGCAGTGTCTGGCAGTGCCAATGAGGAAAGTGGCTGGACTTCTTACTTCGAAGAATTCTCTAAAGGCATGGAGCAGCAAAGTTACTGTTCCAATTTAGGTGGCTCCTCTTTGGTCTCAGATGCTGCTTCTTGTGCTGCATGGAAACTCTCACATCACAATCACCTTGTTTCCCACCCTTCTAATAATAATGTTGTCTCTAAGAAACTTCGTTTCAAGAAAACAAGAACCCAACAGATATCAGATGATGATCCTTTGGAGGACACTGCTAGCTCCCCAGTCAATAGTCCCAAGGGTAAGGAGTTTAACTCAGAGCATCATCCGAAGCTGCAGGCTGATGAATGTGACATAAATTTTAATGGAAACAATATTGAGTGCAACACAAACTTGAAGAAAAAGGGTCTCTGCTTGGTTCCTTTGTCCATGTTGGTTAATTATTATGGGTGAATGGTGCTTTTGTCTATGGCCTTTAATTTCCTTGTCTTGTAACCTTCTCTTTGTATTCTTCTATGTAGCTTGACTATTCAGGTTAATTACGTTGCTGTATACCTATATAGCATGATCGATCAGTGACAGATAATCTGTATGACTGTATTATACCAATCATTGTTATCATAACATGAGTCCATAATTTATGTTTTGTTC

>Glyma13g38410.3   sequence type=transcript   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCTAAAACCGATTCTCGAACACTTCTTTAGATGTTTATACTTGGAGAGAGATTAGATTAATTGGGACCATGATTATCTCATACCACTGTATAATTTCTGCGTAGGAGGAGAGAAAAGATAAAATGAAGGGAGGTGTTTGCTAATATTAAATATCCTAAAATCATGACTCATTATCATTCATTCCTCCCTATTTTTGTCTCTCTCTCATGGTGTAGGTGTGTAGCAGACATTTAGTATCCATACAAAATTATTCTAAACTCATAGTGTTATAAATCCCTCGAGAGAGAGGAAGTCTCTCAACCTCTGACAAACAAAACACACAAACACTCTTTCCTGATGGAGCATTCTCTGAATCCTTCTATGGGAAAAGCAGTGTCTGGCAGTGCCAATGAGGAAAGTGGCTGGACTTCTTACTTCGAAGAATTCTCTAAAGGCATGGAGCAGCAAAGTTACTGTTCCAATTTAGGTGGCTCCTCTTTGGTCTCAGATGCTGCTTCTTGTGCTGCATGGAAACTCTCACATCACAATCACCTTGTTTCCCACCCTTCTAATAATAATGTTGTCTCTAAGAAACTTCGTTTCAAGAAAACAAGAACCCAACAGATATCAGATGATGATCCTTTGGAGGACACTGCTAGCTCCCCAGTCAATAGTCCCAAGGTAGGAGTCTTGAAAGTTTCTAGCAAGATTGATAATCAACTAGATGGGTAAGGAGTTTAACTCAGAGCATCATCCGAAGCTGCAGGCTGATGAATGTGACATAAATTTTAATGGAAACAATATTGAGTGCAACACAAACTTGAAGAAAAAGGGTCTCTGCTTGGTTCCTTTGTCCATGTTGGTTAATTATTATGGGTGAATGGTGCTTTTGTCTATGGCCTTTAATTTCCTTGTCTTGTAACCTTCTCTTTGTATTCTTCTATGTAGCTTGACTATTCAGGTTAATTACGTTGCTGTATACCTATATAGCATGATCGATCAGTGACAGATAATCTGTATGACTGTATTATACCAATCATTGTTATCATAACATGAGTCCATAATTTATGTTTTGTTC

Coding sequences of Glyma13g38410

Limit To All Plant Sequences

>Glyma13g38410.1   sequence type=CDS   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATTCTCTGAATCCTTCTATGGGAAAAGCAGTGTCTGGCAGTGCCAATGAGGAAAGTGGCTGGACTTCTTACTTCGAAGAATTCTCTAAAGGCATGGAGCAGCAAAGTTACTGTTCCAATTTAGGTGGCTCCTCTTTGGTCTCAGATGCTGCTTCTTGTGCTGCATGGAAACTCTCACATCACAATCACCTTGTTTCCCACCCTTCTAATAATAATGTTGTCTCTAAGAAACTTCGTTTCAAGAAAACAAGAACCCAACAGATATCAGATGATGATCCTTTGGAGGACACTGCTAGCTCCCCAGTCAATAGTCCCAAGGTAGGAGTCTTGAAAGTTTCTAGCAAGATTGATAATCAACTAGATGGTTGTACTTCTAGGGGTAAGGAGTTTAACTCAGAGCATCATCCGAAGCTGCAGGCTGATGAATGTGACATAAATTTTAATGGAAACAATATTGAGTGCAACACAAACTTGAAGAAAAAGGGTCTCTGCTTGGTTCCTTTGTCCATGTTGGTTAATTATTATGGGTGA

>Glyma13g38410.2   sequence type=CDS   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATTCTCTGAATCCTTCTATGGGAAAAGCAGTGTCTGGCAGTGCCAATGAGGAAAGTGGCTGGACTTCTTACTTCGAAGAATTCTCTAAAGGCATGGAGCAGCAAAGTTACTGTTCCAATTTAGGTGGCTCCTCTTTGGTCTCAGATGCTGCTTCTTGTGCTGCATGGAAACTCTCACATCACAATCACCTTGTTTCCCACCCTTCTAATAATAATGTTGTCTCTAAGAAACTTCGTTTCAAGAAAACAAGAACCCAACAGATATCAGATGATGATCCTTTGGAGGACACTGCTAGCTCCCCAGTCAATAGTCCCAAGGGTAAGGAGTTTAACTCAGAGCATCATCCGAAGCTGCAGGCTGATGAATGTGACATAAATTTTAATGGAAACAATATTGAGTGCAACACAAACTTGAAGAAAAAGGGTCTCTGCTTGGTTCCTTTGTCCATGTTGGTTAATTATTATGGGTGA

>Glyma13g38410.3   sequence type=CDS   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATTCTCTGAATCCTTCTATGGGAAAAGCAGTGTCTGGCAGTGCCAATGAGGAAAGTGGCTGGACTTCTTACTTCGAAGAATTCTCTAAAGGCATGGAGCAGCAAAGTTACTGTTCCAATTTAGGTGGCTCCTCTTTGGTCTCAGATGCTGCTTCTTGTGCTGCATGGAAACTCTCACATCACAATCACCTTGTTTCCCACCCTTCTAATAATAATGTTGTCTCTAAGAAACTTCGTTTCAAGAAAACAAGAACCCAACAGATATCAGATGATGATCCTTTGGAGGACACTGCTAGCTCCCCAGTCAATAGTCCCAAGGTAGGAGTCTTGAAAGTTTCTAGCAAGATTGATAATCAACTAGATGGGTAA

Predicted protein sequences of Glyma13g38410

Limit To All Plant Sequences

>Glyma13g38410.1   sequence type=predicted peptide   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHSLNPSMGKAVSGSANEESGWTSYFEEFSKGMEQQSYCSNLGGSSLVSDAASCAAWKLSHHNHLVSHPSNNNVVSKKLRFKKTRTQQISDDDPLEDTASSPVNSPKVGVLKVSSKIDNQLDGCTSRGKEFNSEHHPKLQADECDINFNGNNIECNTNLKKKGLCLVPLSMLVNYYG*

>Glyma13g38410.2   sequence type=predicted peptide   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHSLNPSMGKAVSGSANEESGWTSYFEEFSKGMEQQSYCSNLGGSSLVSDAASCAAWKLSHHNHLVSHPSNNNVVSKKLRFKKTRTQQISDDDPLEDTASSPVNSPKGKEFNSEHHPKLQADECDINFNGNNIECNTNLKKKGLCLVPLSMLVNYYG*

>Glyma13g38410.3   sequence type=predicted peptide   gene model=Glyma13g38410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHSLNPSMGKAVSGSANEESGWTSYFEEFSKGMEQQSYCSNLGGSSLVSDAASCAAWKLSHHNHLVSHPSNNNVVSKKLRFKKTRTQQISDDDPLEDTASSPVNSPKVGVLKVSSKIDNQLDG*

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