SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22060 | AT | Annotation by Michelle Graham. TAIR10: Receptor-like protein kinase-related family protein | chr3:7771065-7772137 FORWARD LENGTH=252 | SoyBase | E_val: 2.00E-84 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PF01657 | PFAM | Domain of unknown function DUF26 | JGI | ISS | |
| UniRef100_G7IKM1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich repeat secretory protein n=1 Tax=Medicago truncatula RepID=G7IKM1_MEDTR | SoyBase | E_val: 3.00E-138 | ISS |
| UniRef100_UPI000189D8B6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D8B6 related cluster n=1 Tax=unknown RepID=UPI000189D8B6 | SoyBase | E_val: 7.00E-179 | ISS |
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Glyma13g38170 not represented in the dataset |
Glyma13g38170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g305800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38170.1 sequence type=CDS gene model=Glyma13g38170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCCTCAAAGCTCTTCACCACTTTTCTTTTCTCACTAAACTTAGCTCTCCTTCTCCAAACATCTTTTGGAGCCGACCCTCTCTTCCATTTCTGTTCAAATTCTGAGAACTTCACAGCCAACAGTCCCTATGAATCAAACTTGAAAACACTCATCAACTCACTCATCTACAAGACCCCTTCAACTGGTTTTGGTGTTGGCTCTGTGGGCCAATACCAAAACCAAAAGGCATATGCGCTTGCCCTTTGCCGCGGCGACGTGTCGGCCTCAGAGTGCAAAACTTGTGTCTCTGAGGCACCCAAAGAAATCCTCAGTCGCTGTCCATACAACAAAGGTGCCATCATTTGGTACGACTATTGCATGTTCAAGTACTTGGACACTGACTTCCTTGGCAAAATTGACAACACAAACAAGTTCTACATGTGGAACTTGAAAAATGTGAGTGACCCTGCAACGTTTAACTATAACACTAGAGACTTATTGAGCCAGCTTGCTCAGAAAGCTTATGTGAATAATAAATTGTATGCAACTGGAGAGGCGAAGCTTGAGAATTCGGAGACACTTTATGGTTTGACTCAGTGCACTAGAGATCTTTCTAGCAGTGATTGCAAGAAGTGTCTTGATGATGCAATCAATGAACTCCCAAATTGTTGTGATGGCAAAGAAGGAGGTAGAGTTGTGAGTGGAAGCTGCAACTTCCGTTATGAGATATACCCCTTTGTTAAGGAGTAA
>Glyma13g38170.1 sequence type=predicted peptide gene model=Glyma13g38170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSKLFTTFLFSLNLALLLQTSFGADPLFHFCSNSENFTANSPYESNLKTLINSLIYKTPSTGFGVGSVGQYQNQKAYALALCRGDVSASECKTCVSEAPKEILSRCPYNKGAIIWYDYCMFKYLDTDFLGKIDNTNKFYMWNLKNVSDPATFNYNTRDLLSQLAQKAYVNNKLYATGEAKLENSETLYGLTQCTRDLSSSDCKKCLDDAINELPNCCDGKEGGRVVSGSCNFRYEIYPFVKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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