Glyma13g38140 - SoyBase

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Report for Sequence Feature Glyma13g38140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39039557
stop:	39042119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51070	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:18928018-18929513 FORWARD LENGTH=226	SoyBase	E_val: 2.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI		ISS
PTHR23042:SF22	Panther	BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IKM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor ILR3 n=1 Tax=Medicago truncatula RepID=G7IKM3_MEDTR	SoyBase	E_val: 1.00E-104	ISS
UniRef100_I1M411	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M411_SOYBN	SoyBase	E_val: 9.00E-169	ISS

Expression Patterns of Glyma13g38140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38140

Paralog	Evidence	Comments
Glyma12g32280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g305500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g38140

Limit To All Plant Sequences

>Glyma13g38140.1   sequence type=CDS   gene model=Glyma13g38140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGAATTCCTCAGGTGGTGCCTCCGATTGGCTTTATGATTATGGCTTTGATATTCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCCGTTGGGGGCCTCAGAGTCACAACTTCAAGGGTCCCTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTACGAAGGGATAAACTAAATGAGAGGTTTCTGGAATTGAGTTCCATCCTGGAGCCTAGTAGGCAGCCCAAATCAGACAAAGTTGCAATATTAAGCGATGCGGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCAAGAGGCTGAAGGAAATGAATGATGAACTACAGGCAAAAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGTTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAAGTAAAAGTGGCAAATATACAACCCAGCTTCCTGCCTCAAGCCCCAGATGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACATCAAAGGATCACCTTCTTCGACCTCCAGTTGCATAA

Predicted protein sequences of Glyma13g38140

Limit To All Plant Sequences

>Glyma13g38140.1   sequence type=predicted peptide   gene model=Glyma13g38140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVNSSGGASDWLYDYGFDIPVAGSDFMASDSGGFRWGPQSHNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPSRQPKSDKVAILSDAARVVIQLRNEAKRLKEMNDELQAKVKELKGEKNELRDEKNRLKEEKEKLEQQVKVANIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA*

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