Glyma13g38050 - SoyBase

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Report for Sequence Feature Glyma13g38050

Feature Type:	gene_model
Chromosome:	Gm13
Start:	38963246
stop:	38968980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16730	AT	Annotation by Michelle Graham. TAIR10: terpene synthase 02 \| chr4:9403119-9406003 FORWARD LENGTH=539	SoyBase	E_val: 3.00E-111	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_G7IRJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myrcene synthase n=1 Tax=Medicago truncatula RepID=G7IRJ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M404	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1M404_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g38050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38050

Paralog	Evidence	Comments
Glyma12g32381	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g304500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g38050

Limit To All Plant Sequences

>Glyma13g38050.3   sequence type=transcript   gene model=Glyma13g38050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATAGTGCCACAAAGCCATTTGGTTCTATCATTCTATCGGGACACCTAGTCCTTTATAGCAGCAACATACCCAAAGTTGACGCGCCAATGTCTTTAAATGCAATGGCATTTACAAAACTTAGAGTTTCATCGTTTACAAGCTCACTTGCTAGTAACAATTCAAGGCCATCCATTTATCAACCATGGAACTTATCGTTGCAATCATCAAAAATAGGAATGGTGCCAAATAAATTATCCATCAAGTCCGTTGCTTTTAGTGACAAGGTGCCTAGTCAAACTTATCTTGGTACGAAAGATTTGGATCAAGTTATAAGAAAAGGCCAAGAGGCATTGTTAAACTCAAGTGATCCATTGAGAACATTGAAGATAATTGACACCATCCAAAAGTTAGGAATTGAGCACCATTTCGAAAAGGAAATCAACTTACAGCTTGGAAGGGTAGGGGATTGGGACACTGCCGAAGACCTTTTTGCCACAGCTCTTCAATTCCGCTTGCTTAGGCATAATGGTTGGCCTACATGTTCTGAGTGGGAATTTCAAGGAATCTGTCACCAGAGACATTTGGGGCATGTTAAGTTTGTATGAGGCATCATATTTAGGTGCAAAAGGCGAAGAAGTACTACAACAAGCAATGGACTACTCAAGGGCTCATCTGTGTCAATCACTCCCACACCTAAGCCCTAAAGTAAGAAGTATAGTCGCTGAAGCCTTAAAGCTTCCAAGGCACCAAAGAATGGTTGGGTTGGAAGCCAAAAACTACATGGTAGAATATAGCCAAGCAAGCAACCAAATACCAGCTCTTCTAGAATTGGCAAGGCTAGACTATGACATGATTCAATCGATGCACCAAAAAGAATTAGCAGAGATCTCGAGGTGGTGGAAAGACTTGGGACTTATTGAAAGACTTGGTTTTGGAAGAGATGGACCAAGAGAGTGTTTCTTATGGGCATTGGGGATTTTTCCAGAACCTCGTCATTCAAGTTGCCGCATTGAACTTGCAAAAGCCATCTGCGTTTTACAAGTTATAGATGATGTGTTCGACACTTACGGAACATTAGATGAACTTGTTCTTTTTACTAAGGCAATCAAAAGGTGGGATCTTGATGCGATGGAGCAACTACCTGAATATATGAAAATATGTTATATGGCATTGTACAACACCACCCATGAAATTGCATACAAAATTCAGAAAGACCACAGCCTAACTGTAGTTGCTTGTTTGAAAATAACATGGATAGACTTAATTGAAGCTTATCTTAAAGAAGCCAACTGGTTCAACAACAAACATGTGCCAACTTTTCAGCAATATTTGGATAATGGGGTGATTTCTTCAGGATCATACCTGGCCTTGGTGCATGCAACTTTCCTCATTGGGGATGACCTCTCAAAAGAAACCATTTTCATGATGAATCCATATCCAAGGCTTTTTTCTTGCTCTGGGAAAATTCTTAGGCTTTGGGACGACTTAGGAACCTCAAGGGATGAGCAAGAAAGAGGTGATAATGCTTGTAGCATACAATGTCTCATGAAACAAAATAATATTTCAGATGAAAATGTTGCCAGGAAACTTATAAGGCAACTCATAGATAACTTATGGCCAGAGCTAAATGGTCTTACCATGACCACCAATCTTCCTTTGTCAGTTATGAGGGCTTCTCTCAACATGGCTAGAACTTCTCAAGTTATTTATCGACATGGAGATGATCAAAACATGCCTACAGTTGATGAACATGTTCAAACATTGCTGTTTACTCCCTCTATCAACTATCGAGATGAAAATGATATCAATCATGTTATTTGATTCAAATTTATAAATTTTCAATTTTTTTGTCTTTAGTGATGGCTTGACTTCCTCGATTCATCATAATATATGCTAATAAAATTAATAGACTAGTTAAACAATTTAATTTATATATAGAAGAGTACATATTCCTTGAG

Coding sequences of Glyma13g38050

Limit To All Plant Sequences

>Glyma13g38050.2   sequence type=CDS   gene model=Glyma13g38050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTAAATGCAATGGCATTTACAAAACTTAGAGTTTCATCGTTTACAAGCTCACTTGCTAGTAACAATTCAAGGCCATCCATTTATCAACCATGGAACTTATCGTTGCAATCATCAAAAATAGGAATGGTGCCAAATAAATTATCCATCAAGTCCGTTGCTTTTAGTGACAAGGTGCCTAGTCAAACTTATCTTGGTACGAAAGATTTGGATCAAGTTATAAGAAAAGGCCAAGAGGCATTGTTAAACTCAAGTGATCCATTGAGAACATTGAAGATAATTGACACCATCCAAAAGTTAGGAATTGAGCACCATTTCGAAAAGGAAATCAACTTACAGCTTGGAAGGGTAGGGGATTGGGACACTGCCGAAGACCTTTTTGCCACAGCTCTTCAATTCCGCTTGCTTAGGCATAATGGTTGGCCTACATGTTCTGATGTTTTCAACAAATTTTTGGACAAGAGTGGGAATTTCAAGGAATCTGTCACCAGAGACATTTGGGGCATGTTAAGTTTGTATGAGGCATCATATTTAGGTGCAAAAGGCGAAGAAGTACTACAACAAGCAATGGACTACTCAAGGGCTCATCTGTGTCAATCACTCCCACACCTAAGCCCTAAAGTAAGAAGTATAGTCGCTGAAGCCTTAAAGCTTCCAAGGCACCAAAGAATGGTTGGGTTGGAAGCCAAAAACTACATGGTAGAATATAGCCAAGCAAGCAACCAAATACCAGCTCTTCTAGAATTGGCAAGGCTAGACTATGACATGATTCAATCGATGCACCAAAAAGAATTAGCAGAGATCTCGAGGTGGTGGAAAGACTTGGGACTTATTGAAAGACTTGGTTTTGGAAGAGATGGACCAAGAGAGTGTTTCTTATGGGCATTGGGGATTTTTCCAGAACCTCGTCATTCAAGTTGCCGCATTGAACTTGCAAAAGCCATCTGCGTTTTACAAGTTATAGATGATGTGTTCGACACTTACGGAACATTAGATGAACTTGTTCTTTTTACTAAGGCAATCAAAAGGTGGGATCTTGATGCGATGGAGCAACTACCTGAATATATGAAAATATGTTATATGGCATTGTACAACACCACCCATGAAATTGCATACAAAATTCAGAAAGACCACAGCCTAACTGTAGTTGCTTGTTTGAAAATAACATGGATAGACTTAATTGAAGCTTATCTTAAAGAAGCCAACTGGTTCAACAACAAACATGTGCCAACTTTTCAGCAATATTTGGATAATGGGGTGATTTCTTCAGGATCATACCTGGCCTTGGTGCATGCAACTTTCCTCATTGGGGATGACCTCTCAAAAGAAACCATTTTCATGATGAATCCATATCCAAGGCTTTTTTCTTGCTCTGGGAAAATTCTTAGGCTTTGGGACGACTTAGGAACCTCAAGGGATGAGCAAGAAAGAGGTGATAATGCTTGTAGCATACAATGTCTCATGAAACAAAATAATATTTCAGATGAAAATGTTGCCAGGAAACTTATAAGGCAACTCATAGATAACTTATGGCCAGAGCTAAATGGTCTTACCATGACCACCAATCTTCCTTTGTCAGTTATGAGGGCTTCTCTCAACATGGCTAGAACTTCTCAAGTTATTTATCGACATGGAGATGATCAAAACATGCCTACAGTTGATGAACATGTTCAAACATTGCTGTTTACTCCCTCTATCAACTATCGAGATGAAAATGATATCAATCATGTTATTTGA

>Glyma13g38050.3   sequence type=CDS   gene model=Glyma13g38050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCCTACATGTTCTGAGTGGGAATTTCAAGGAATCTGTCACCAGAGACATTTGGGGCATGTTAAGTTTGTATGAGGCATCATATTTAGGTGCAAAAGGCGAAGAAGTACTACAACAAGCAATGGACTACTCAAGGGCTCATCTGTGTCAATCACTCCCACACCTAAGCCCTAAAGTAAGAAGTATAGTCGCTGAAGCCTTAAAGCTTCCAAGGCACCAAAGAATGGTTGGGTTGGAAGCCAAAAACTACATGGTAGAATATAGCCAAGCAAGCAACCAAATACCAGCTCTTCTAGAATTGGCAAGGCTAGACTATGACATGATTCAATCGATGCACCAAAAAGAATTAGCAGAGATCTCGAGGTGGTGGAAAGACTTGGGACTTATTGAAAGACTTGGTTTTGGAAGAGATGGACCAAGAGAGTGTTTCTTATGGGCATTGGGGATTTTTCCAGAACCTCGTCATTCAAGTTGCCGCATTGAACTTGCAAAAGCCATCTGCGTTTTACAAGTTATAGATGATGTGTTCGACACTTACGGAACATTAGATGAACTTGTTCTTTTTACTAAGGCAATCAAAAGGTGGGATCTTGATGCGATGGAGCAACTACCTGAATATATGAAAATATGTTATATGGCATTGTACAACACCACCCATGAAATTGCATACAAAATTCAGAAAGACCACAGCCTAACTGTAGTTGCTTGTTTGAAAATAACATGGATAGACTTAATTGAAGCTTATCTTAAAGAAGCCAACTGGTTCAACAACAAACATGTGCCAACTTTTCAGCAATATTTGGATAATGGGGTGATTTCTTCAGGATCATACCTGGCCTTGGTGCATGCAACTTTCCTCATTGGGGATGACCTCTCAAAAGAAACCATTTTCATGATGAATCCATATCCAAGGCTTTTTTCTTGCTCTGGGAAAATTCTTAGGCTTTGGGACGACTTAGGAACCTCAAGGGATGAGCAAGAAAGAGGTGATAATGCTTGTAGCATACAATGTCTCATGAAACAAAATAATATTTCAGATGAAAATGTTGCCAGGAAACTTATAAGGCAACTCATAGATAACTTATGGCCAGAGCTAAATGGTCTTACCATGACCACCAATCTTCCTTTGTCAGTTATGAGGGCTTCTCTCAACATGGCTAGAACTTCTCAAGTTATTTATCGACATGGAGATGATCAAAACATGCCTACAGTTGATGAACATGTTCAAACATTGCTGTTTACTCCCTCTATCAACTATCGAGATGAAAATGATATCAATCATGTTATTTGA

Predicted protein sequences of Glyma13g38050

Limit To All Plant Sequences

>Glyma13g38050.2   sequence type=predicted peptide   gene model=Glyma13g38050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLNAMAFTKLRVSSFTSSLASNNSRPSIYQPWNLSLQSSKIGMVPNKLSIKSVAFSDKVPSQTYLGTKDLDQVIRKGQEALLNSSDPLRTLKIIDTIQKLGIEHHFEKEINLQLGRVGDWDTAEDLFATALQFRLLRHNGWPTCSDVFNKFLDKSGNFKESVTRDIWGMLSLYEASYLGAKGEEVLQQAMDYSRAHLCQSLPHLSPKVRSIVAEALKLPRHQRMVGLEAKNYMVEYSQASNQIPALLELARLDYDMIQSMHQKELAEISRWWKDLGLIERLGFGRDGPRECFLWALGIFPEPRHSSCRIELAKAICVLQVIDDVFDTYGTLDELVLFTKAIKRWDLDAMEQLPEYMKICYMALYNTTHEIAYKIQKDHSLTVVACLKITWIDLIEAYLKEANWFNNKHVPTFQQYLDNGVISSGSYLALVHATFLIGDDLSKETIFMMNPYPRLFSCSGKILRLWDDLGTSRDEQERGDNACSIQCLMKQNNISDENVARKLIRQLIDNLWPELNGLTMTTNLPLSVMRASLNMARTSQVIYRHGDDQNMPTVDEHVQTLLFTPSINYRDENDINHVI*

>Glyma13g38050.3   sequence type=predicted peptide   gene model=Glyma13g38050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGLHVLSGNFKESVTRDIWGMLSLYEASYLGAKGEEVLQQAMDYSRAHLCQSLPHLSPKVRSIVAEALKLPRHQRMVGLEAKNYMVEYSQASNQIPALLELARLDYDMIQSMHQKELAEISRWWKDLGLIERLGFGRDGPRECFLWALGIFPEPRHSSCRIELAKAICVLQVIDDVFDTYGTLDELVLFTKAIKRWDLDAMEQLPEYMKICYMALYNTTHEIAYKIQKDHSLTVVACLKITWIDLIEAYLKEANWFNNKHVPTFQQYLDNGVISSGSYLALVHATFLIGDDLSKETIFMMNPYPRLFSCSGKILRLWDDLGTSRDEQERGDNACSIQCLMKQNNISDENVARKLIRQLIDNLWPELNGLTMTTNLPLSVMRASLNMARTSQVIYRHGDDQNMPTVDEHVQTLLFTPSINYRDENDINHVI*

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