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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03210 | AT | Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 9 | chr4:1416019-1417197 FORWARD LENGTH=290 | SoyBase | E_val: 9.00E-163 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0016762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity | SoyBase | N/A | ISS |
| GO:0016798 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds | SoyBase | N/A | ISS |
| PTHR10963 | Panther | SECRETED GLUCOSIDASE-RELATED | JGI | ISS | |
| PTHR10963:SF14 | Panther | BETA-GLUCANASE | JGI | ISS | |
| PF00722 | PFAM | Glycosyl hydrolases family 16 | JGI | ISS | |
| PF06955 | PFAM | Xyloglucan endo-transglycosylase (XET) C-terminus | JGI | ISS | |
| UniRef100_C6TMP1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMP1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IRJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglucosylase/hydrolase n=2 Tax=Medicago truncatula RepID=G7IRJ7_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma13g38040 not represented in the dataset |
Glyma13g38040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g32390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g304400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g38040.2 sequence type=transcript gene model=Glyma13g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCATTCCTTGGAATTTGAAACCCTGGTGTGGCTAGTGACATGGCACACACCTTCTCTACGTGGAACGAATGAACGGGGCTATAAATAATACCTAACGCCTACAGGCCTCTCTCGTGAGCCCTCACAGAGAAAGCATTGGGGAGTAGAAGTAGAAGCTTCACTTCACTCTGTTCAGTTCTTATTGTTGCATAGATAATTTGTCTCTATTTTTGTTATTTTCTTTCTCTCTCCTCTTTGTGCATTTTAATAGCAACTCTTAGTTTCCAATGTCCAAGATGTTGGGAGTGTTTGTGGGACTTTTGCTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTTCTCAAACTCAAACTTGATAACTATTCTGATCTGATTCTTGTTAGTCCATTTAACAGCCCTGCAAAATGTGTTATTTTTCAGCTAAATATGTGACCTTTTTTTGAACACTGCAGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGCAACACCACTGGTGAACCTTACTCAGTCCAAACCAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGCTCTATCTGGAACGCGGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCCACCTACAAGGACTTCCAAATCGACGCGTGCGCGTGCCCCGTGCCGGTGACGTCAGCAGATAGTGCTAAGAACTGTAGCAGCAGCGAGGATAAGAAGTATTGGTGGGACGAACCAACGTTGTCCGAACTGAACTTGCACCAGAGCCACCAGCTCATGTGGGTTAGGGCTAACCATATGGTTTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTATACCTGCTGAGTGTGTTCACCACCGTCACCACTGAAAGGGAGAAGAGAAGAGGAAGAGAACGAACTACTTTTGTTTAACATAACATGTGCTTCATGTTTCACCTTGTAACATATTTCGCCTTAGCTTTATGTGAATTCTTTTATTTCCTTGTTTAATCATTAGTACCATCCAATTTTATTCTTTTTGTTTTTTAATTTGGACCAAGAGAGAAACTAGTGAGATTTTCTAAGATTAATAGACCATCAATTTTAAAATATATCATGTGTAATTTCTAAAATAAACCATCAAAACAAACTCGGATTGGGCAAGATTAATAGAGATGGATTGTACTTATTTTTACTATTATTTAAA
>Glyma13g38040.1 sequence type=CDS gene model=Glyma13g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAAGATGTTGGGAGTGTTTGTGGGACTTTTGCTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTTCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGCAACACCACTGGTGAACCTTACTCAGTCCAAACCAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGCTCTATCTGGAACGCGGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCCACCTACAAGGACTTCCAAATCGACGCGTGCGCGTGCCCCGTGCCGGTGACGTCAGCAGATAGTGCTAAGAACTGTAGCAGCAGCGAGGATAAGAAGTATTGGTGGGACGAACCAACGTTGTCCGAACTGAACTTGCACCAGAGCCACCAGCTCATGTGGGTTAGGGCTAACCATATGGTTTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTATACCTGCTGAGTGTGTTCACCACCGTCACCACTGA >Glyma13g38040.2 sequence type=CDS gene model=Glyma13g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGCAACACCACTGGTGAACCTTACTCAGTCCAAACCAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTTTTCCTGGTGGATGAGACGCCAATAAGGGTGCACACGAACCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGCTCTATCTGGAACGCGGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCCACCTACAAGGACTTCCAAATCGACGCGTGCGCGTGCCCCGTGCCGGTGACGTCAGCAGATAGTGCTAAGAACTGTAGCAGCAGCGAGGATAAGAAGTATTGGTGGGACGAACCAACGTTGTCCGAACTGAACTTGCACCAGAGCCACCAGCTCATGTGGGTTAGGGCTAACCATATGGTTTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTATACCTGCTGAGTGTGTTCACCACCGTCACCACTGA
>Glyma13g38040.1 sequence type=predicted peptide gene model=Glyma13g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKMLGVFVGLLLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFQIDACACPVPVTSADSAKNCSSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCADTARFPVIPAECVHHRHH* >Glyma13g38040.2 sequence type=predicted peptide gene model=Glyma13g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFQIDACACPVPVTSADSAKNCSSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCADTARFPVIPAECVHHRHH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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