Glyma13g38000 - SoyBase

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Report for Sequence Feature Glyma13g38000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	38936763
stop:	38941178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g38000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54510	AT	Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein \| chr5:22131321-22133564 REVERSE LENGTH=612	SoyBase	E_val: 0	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0010252	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin homeostasis	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010279	GO-mf	Annotation by Michelle Graham. GO Molecular Function: indole-3-acetic acid amido synthetase activity	SoyBase	N/A	ISS
PF03321	PFAM	GH3 auxin-responsive promoter	JGI		ISS
UniRef100_B9I6J6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GH3 family protein n=1 Tax=Populus trichocarpa RepID=B9I6J6_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1M3Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M3Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g38000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g38000

Paralog	Evidence	Comments
Glyma12g32410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g38000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g304000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g38000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g38000

Limit To All Plant Sequences

>Glyma13g38000.1   sequence type=CDS   gene model=Glyma13g38000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTTCCTCACTCCGAAACTCAATAGCTATTAATTCTTTAGCCATGCCTGAAGCTCCAAAGCACTTATGCCACGATCCAAAGGATAACCTTGATGATGATGATGATGATGGTAGTAGTAACAACAATAAGAGAGCACTCGAATACATTGAGGAGGTCACCACCAACGCTGATGAAATTCAAGAAAAGGTGCTTGCCCAGATCCTTTCTCGAAGTGCAAACGCTGAATACCTCCAACGCCATGGCCTAGAAGGACGCACTGACAGAAACACCTTCAAGAATATCATGCCCGTGGTCACTTACGAGGATTTAAAGCCAGATATTGATCGTATAGCCAATGGTGATACCTCCCCAATTTTATGCTCCAAACCCATATCAGAGTTCCTCACTAGCTCTGGGACTTCTGGTGGGGAGAGAAAATTGATGCCAACCATAGAAGAGGAGCTAGAGAGGAGATCAATGCTTTATAGCCTCTTGATGCCAGTGATGGATCAGTTTGTGCCCGATTTGGACAAAGGCAAAGGCATGTACTTTTTGTTCACAAAATCAGAAGCCAAAACCCCTGGTGGACTCCTTGCTCGTCCAGTTTTGACAAGCTATTACAAAAGCTCACATTTCAAGCACCGCAAACACGATCCCTACACAAACTACACAAGCCCCAATGAAACCATTCTCTGCCATGACTCTTACCAAAGCATGTACTCTCAGTTACTTTGTGGCCTTTACCAAAACGAGGAAGTTCTTCGTGTTGGCGCAGTCTTCGCCTCAGGTTTCATTCGTGCCCTTAAGTTCCTCGAAAAACACTTTGTTTGTTTGTGCAATGACATAAGAACTGGTACCTTAGACGCCAAAATCACTGACCCTTCTGTGAGAGAGGCTGTTATGAAAGTACTCAAACCAAATCCCACGCTTGCGGATTTCGTAGAAACTGAATGCATGAAGGGGTCATGGAAGGGAATTATTACTAGGATATGGCCCAACACCAAGTATGTTGATGTTATTGTCACGGGAACCATGTCTCAGTACATTCCCATATTGGATTATTATAGCAATGGTCTCCCTCTTGTGTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCCTCAATTTGAACCCCTCGTGTGATCCAAGTGAGGTAGCTTACACCCTTATTCCTACCATGGCTTACTTTGAGTTCTTGCCCCTCGATGAGATCAACGGACATACTAATTCAATTTCTCAACTGGAGCAAGAGCATTTGGTGGATCTTGCAGATGTGAAGTTGGGTCAAGAATATGAGCTTGTGGTCACCACTTATGCAGGACTTTATAGATACCGGGTTGGTGACATTCTCCGTGTAGCCGGATTCAAGAACAAGGCTCCTCAATTCAACTTCGTGTGCCGAAAGAACGTGGTTCTGAGCATTGACTCTGACAAAACCGACGAAGTTGAGCTACATAATGCAGTGAAGAGTGGAGCTGAGCAACTTGCTGAATTCAATGCATCTCTAACAGAATACACAAGCTGCGTGGACACATCAACCATCCCTGGCCACTACGTTCTGTACTGGGAAATTAGCACAAATGACCATACCCCAACAATTCCTTCTTCCGTTTTTGGGCATTGTTGCCTTTCGATTGAGGAGTCTCTAAACAGCGTGTATCGCCAAGGAAGGGTGTCAGAGTCTATTGGACCATTGGAAATTAAGGTGGTTGAGAATGGCACATTTGACAAGCTCATGGACTTTGCTCTCAGCCAGGGTGCGTCCATTAACCAATACAAGACTCCTCGTTGCGTCACATATGCGCCCATTCTGGACCTTCTAAACTCTAAAGTGTTGTCCAGTTACATTAGCCCAAAATGCCCAAATTGGGTTCCTGGTCACAAGGACTGGTGCACTCTTCATTGA

Predicted protein sequences of Glyma13g38000

Limit To All Plant Sequences

>Glyma13g38000.1   sequence type=predicted peptide   gene model=Glyma13g38000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSSLRNSIAINSLAMPEAPKHLCHDPKDNLDDDDDDGSSNNNKRALEYIEEVTTNADEIQEKVLAQILSRSANAEYLQRHGLEGRTDRNTFKNIMPVVTYEDLKPDIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSMLYSLLMPVMDQFVPDLDKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSSHFKHRKHDPYTNYTSPNETILCHDSYQSMYSQLLCGLYQNEEVLRVGAVFASGFIRALKFLEKHFVCLCNDIRTGTLDAKITDPSVREAVMKVLKPNPTLADFVETECMKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPSCDPSEVAYTLIPTMAYFEFLPLDEINGHTNSISQLEQEHLVDLADVKLGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELHNAVKSGAEQLAEFNASLTEYTSCVDTSTIPGHYVLYWEISTNDHTPTIPSSVFGHCCLSIEESLNSVYRQGRVSESIGPLEIKVVENGTFDKLMDFALSQGASINQYKTPRCVTYAPILDLLNSKVLSSYISPKCPNWVPGHKDWCTLH*

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