Glyma13g37800 - SoyBase

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Report for Sequence Feature Glyma13g37800

Feature Type:	gene_model
Chromosome:	Gm13
Start:	38752002
stop:	38757050
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g37800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20900	AT	Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 5 \| chr2:8989794-8992798 REVERSE LENGTH=491	SoyBase	E_val: 0	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
PTHR11255	Panther	DIACYLGLYCEROL KINASE	JGI		ISS
PTHR11255:SF1	Panther	MYOSIN HEAVY CHAIN KINASDE	JGI		ISS
PF00609	PFAM	Diacylglycerol kinase accessory domain	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_I1M3Y0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M3Y0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SKS9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G20900 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SKS9_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g37800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g37800

Paralog	Evidence	Comments
Glyma12g32670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g37800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g302200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g37800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g37800

Limit To All Plant Sequences

>Glyma13g37800.1   sequence type=CDS   gene model=Glyma13g37800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGGAGTTGTTTGTGATCTCAAGTTATCTCATCCGCCACCCATAGCCACGGTTCCGTTGGGCACAGGGAATAATCTACCGTTTGCATTTGGTTGGGGGAAGAAGAACCCAGGGACGGATGAACAGGCGGTCAAGTCAGTTCTAGATCAAGTAATGAAAGCTAAGGAAATGAAAATAGACAACTGGCACATTCTTATGCGGATGAGAGCTCCAAAACATGGTCCATGTGATCCAATTCCTCCTCTTGAGTTACCACATTCTTTGCATGCCTTCCATCATATATCTGAGGCAGATGAACTTAATGTGGAAGGTTGCCATACTTTTCGTGGGGGATTTTGGAATTACTTCAGCATGGGAATGGATGCTCAAGTCTCATATGCATTTCATTCTGAACGTAAAATGAATCCTGAAAAATTCAAAAATCAGTTGGTCAATCTGAGTACTTATGCTAAGCTTGGATGCACACAAGGATGGTTTTTTGCTCCTCTGTTCCTTCCTCCTTCCAGCAACATAGCACATCTTGCAAAAGTAAAAGTCATGAAAACACATGGTTGTTGGGAAGACCTGCATATTCCTTCCAGGTCAATTGTATGCCTTAACTTGCCTAGCTTTTCTGGTGGATTGAATCCATGGGGTACACCAAACAGGATGAAGCGGCGTGATAGAGATTTGACACCTCCATATGTAGATGATGGCCTTATAGAGGTGGCACACAGAATCCGCTTTGAGTTTCACAAAGGTGCAGCAGAGTATACGTTCATGAGGATTGATGGGGAACCTTGGAACCAACCCCTCCCAGTTGACAATGATACAGTTTTGGTGGAAATTTCTCTCCATGGCCAGGTTAACATGCTCGCCACTCATGATTCCAAGTCCAAAAGTGTGAATGATCCATCATCACCACACCATAATGATGTTGAGGAAGATGATAGTGATGACGAAGAAGCTAAAGCAGATGAATTCCGGAAGTTTGGCACGGCAGATACATTTAAAATCCCAGACGAGGTGGACCATGCTCATCTTAGTTAG

Predicted protein sequences of Glyma13g37800

Limit To All Plant Sequences

>Glyma13g37800.1   sequence type=predicted peptide   gene model=Glyma13g37800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDEQAVKSVLDQVMKAKEMKIDNWHILMRMRAPKHGPCDPIPPLELPHSLHAFHHISEADELNVEGCHTFRGGFWNYFSMGMDAQVSYAFHSERKMNPEKFKNQLVNLSTYAKLGCTQGWFFAPLFLPPSSNIAHLAKVKVMKTHGCWEDLHIPSRSIVCLNLPSFSGGLNPWGTPNRMKRRDRDLTPPYVDDGLIEVAHRIRFEFHKGAAEYTFMRIDGEPWNQPLPVDNDTVLVEISLHGQVNMLATHDSKSKSVNDPSSPHHNDVEEDDSDDEEAKADEFRKFGTADTFKIPDEVDHAHLS*

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