SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20840 | AT | Annotation by Michelle Graham. TAIR10: Secretory carrier membrane protein (SCAMP) family protein | chr2:8971925-8974400 REVERSE LENGTH=282 | SoyBase | E_val: 6.00E-146 | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG3088 | KOG | Secretory carrier membrane protein | JGI | ISS | |
| PTHR10687 | Panther | SECRETORY CARRIER MEMBRANE PROTEIN | JGI | ISS | |
| PTHR10687:SF2 | Panther | gb def: m01d7.2.p [caenorhabditis elegans] | JGI | ISS | |
| PF04144 | PFAM | SCAMP family | JGI | ISS | |
| UniRef100_B6TAX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SC3 protein n=1 Tax=Zea mays RepID=B6TAX3_MAIZE | SoyBase | E_val: 5.00E-154 | ISS |
| UniRef100_UPI000233BEF8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BEF8 related cluster n=1 Tax=unknown RepID=UPI000233BEF8 | SoyBase | E_val: 0 | ISS |
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Glyma13g37591 not represented in the dataset |
Glyma13g37591 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g32860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g300100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g37591.1 sequence type=CDS gene model=Glyma13g37591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTACCTACGACACCAACCCCTTCGCCCAAGACGAGGTTAATCCCTTCGCCGATGGAACTGCGAAAGGAAATGCATCGGGGCAATCAAATCGTGGTGGTGGTGCAGCCTCAAGGCTTTCACCCCTGTCTCCTGAGCCTTATGATCGTGCAGCAACTGTTGACATTCCTCTTGGATCCTCAAAGGACCTCGAAGCCAAGGAGAAGGAGCTCCAAGCTAGAGAGGCTGAATTGAAAAGAAGGGAACAGGAGCTAAAACGAAAGGAAGATGCTATAGCACGAGCTGGAATTGTTATAGAGGATAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTATGTTGCATTTACAACATGGTTAGGTTTGGTTATATGCCTTTTATGGAATATTATAGCAGTTACTGTAGCTTGGATCAAAGGAGAAGGTCTTTCAATCTGGTTTCTATCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGTCCTCTTTATCGTGCGACAAGGACGGATAGTGCTCTAAGGTTTAGTTTGTTTTTCTTGTCTTACGGGGTGCACATTCTCTTTTGCGTTTATGCTGCAGTTGCTCCTCCAATTATCTTCAAAGGGAAATCTCTCACAGGTATTCTGCCTGCGTTTGAGGTATTGGACTACAATGCATTGGTTGGGATACTCTACTTTATTGGGTTTGGATTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAGCAAGTATACATGTACTTTCGGGGCAGTGGAAAGGCTGCAGAGATGAGGCGTGCAGCTGCGCAAGGGGCCATGAGGGCAGCTCTATGA
>Glyma13g37591.1 sequence type=predicted peptide gene model=Glyma13g37591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTYDTNPFAQDEVNPFADGTAKGNASGQSNRGGGAASRLSPLSPEPYDRAATVDIPLGSSKDLEAKEKELQAREAELKRREQELKRKEDAIARAGIVIEDKNWPPFCPIIHHDIANEIPIHLQSIQYVAFTTWLGLVICLLWNIIAVTVAWIKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRTDSALRFSLFFLSYGVHILFCVYAAVAPPIIFKGKSLTGILPAFEVLDYNALVGILYFIGFGFFCIESLLSIWVIQQVYMYFRGSGKAAEMRRAAAQGAMRAAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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