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Report for Sequence Feature Glyma13g37470

Feature Type:gene_model
Chromosome:Gm13
Start:38545983
stop:38546681
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g37470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65690AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:24431642-24432898 REVERSE LENGTH=252 SoyBaseE_val: 9.00E-26ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_G7K2X8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 rapidly elicited protein n=1 Tax=Medicago truncatula RepID=G7K2X8_MEDTR SoyBaseE_val: 2.00E-24ISS
UniRef100_I1M3U7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M3U7_SOYBN SoyBaseE_val: 7.00E-117ISS

Expression Patterns of Glyma13g37470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g37470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g298800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g37470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g37470
>Glyma13g37470.2   sequence type=CDS   gene model=Glyma13g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCTGAAGCATATGTGCCTAAAAGATATGAGTCTCTAGAGAACCCTTTTGCTCATAAACCGCCGCGTAAGCGTTCTCGTCGTGGTTCTGGTTTTTGCGGGTGCCTGAGGTGTTGTTGCTGCTGCTTTAGTTTCTGCCGTTGCTGCATTTGCACCATTTTTATCATAATTATACTCTTGGTGGGAATTGGTTTGGCTTTATTTTACTTTATTAAGCCTAAGGTTCCTTCCTATGACATTGAACACATTAATGTCAAGTCATTTGATATCAGAAAGGAAAGTAAGGTATACACTGATGTTGTCATTGTCGTGAAAGCGGATAATCCTAATGAAGAAATCGGATTGGACTATTTGGAGAATGAAGTTGGGATAATGTACGTAGGATCTCAACTTAGCTCGGGGCAGATCCCTCCTTTCTTGCAGCCAGGGAAAAACACAACAACGGTCACCGTGGAATTGAAGGGGGAAAATGAATTTAGTGTTGAAATGCAAAATCACTTTATGGAAGACCAGGAAAAAGGGAATATTCCTTTGTTGATAACAGTGAAGCTTCCCATAAGGATCGTGATTAATGATTTGATTCATCTCAGAAAAGTTGTGGTTAATTTAAATTGTTCCGTGGTTATTGACAAGTTGGAAGTCAACAAAAGTCCTAAGATTTTGGACAAAGTTTTCAGCTATGGCATAGAGTTCTGA
Predicted protein sequences of Glyma13g37470
>Glyma13g37470.2   sequence type=predicted peptide   gene model=Glyma13g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSEAYVPKRYESLENPFAHKPPRKRSRRGSGFCGCLRCCCCCFSFCRCCICTIFIIIILLVGIGLALFYFIKPKVPSYDIEHINVKSFDIRKESKVYTDVVIVVKADNPNEEIGLDYLENEVGIMYVGSQLSSGQIPPFLQPGKNTTTVTVELKGENEFSVEMQNHFMEDQEKGNIPLLITVKLPIRIVINDLIHLRKVVVNLNCSVVIDKLEVNKSPKILDKVFSYGIEF*






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